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AsnC matrix and aligment

matrix-quality result

Command: 
AsnC.2nt_upstream-noorf-ovlp-2str.13.meme_quality

Figures

Matrix logo

Decreasing cumulative distributions (dCDF)

Decreasing cumulative distributions (dCDF), logarithmic Y axis

ROC curve (logarithmic X axis)

Matrix information

; convert-matrix  -v 1 -from transfac -i AsnC.2nt_upstream-noorf-ovlp-2str.13.meme_quality_logo
; Input files
;	input	AsnC.2nt_upstream-noorf-ovlp-2str.13.meme_quality_matrix.tf
;	prior	AsnC.2nt_upstream-noorf-ovlp-2str.13.meme_quality2nt_upstream-noorf_Escherichia_coli_K_12_substr__MG1655_uid57779-ovlp-1str.freq.gz_inclusive.tab
; Input format        	transfac
; Output files
;	output	AsnC.2nt_upstream-noorf-ovlp-2str.13.meme_quality_matrix_info.txt
; Output format       	tab
; pseudo-weight       	1
; Background model
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.29086
;		c	0.20809
;		g	0.20476
;		t	0.29629
A	0	0	1	0	2	1	0	0	4	3	0	0	4
C	0	0	0	0	0	2	0	0	0	0	0	2	0
G	0	1	0	0	2	0	1	3	0	0	0	2	0
T	4	3	3	4	0	1	3	1	0	1	4	0	0
//
a  0.1  0.1  0.3  0.1  0.5  0.3  0.1  0.1  0.9  0.7  0.1  0.1  0.9
c  0.0  0.0  0.0  0.0  0.0  0.4  0.0  0.0  0.0  0.0  0.0  0.4  0.0
g  0.0  0.2  0.0  0.0  0.4  0.0  0.2  0.6  0.0  0.0  0.0  0.4  0.0
t  0.9  0.7  0.7  0.9  0.1  0.3  0.7  0.3  0.1  0.3  0.9  0.1  0.1
//
a -1.6 -1.6 -0.1 -1.6  0.5 -0.1 -1.6 -1.6  1.1  0.8 -1.6 -1.6  1.1
c -1.6 -1.6 -1.6 -1.6 -1.6  0.8 -1.6 -1.6 -1.6 -1.6 -1.6  0.8 -1.6
g -1.6  0.2 -1.6 -1.6  0.8 -1.6  0.2  1.1 -1.6 -1.6 -1.6  0.8 -1.6
t  1.1  0.8  0.8  1.1 -1.6 -0.1  0.8 -0.1 -1.6 -0.1  1.1 -1.6 -1.6
//
a -0.1 -0.1 -0.0 -0.1  0.2 -0.0 -0.1 -0.1  0.9  0.5 -0.1 -0.1  0.9
c -0.1 -0.1 -0.1 -0.1 -0.1  0.3 -0.1 -0.1 -0.1 -0.1 -0.1  0.3 -0.1
g -0.1  0.0 -0.1 -0.1  0.3 -0.1  0.0  0.7 -0.1 -0.1 -0.1  0.3 -0.1
t  0.9  0.5  0.5  0.9 -0.1 -0.0  0.5 -0.0 -0.1 -0.0  0.9 -0.1 -0.1
//
; Sites	
;
; Matrix parameters
;	Columns                      	13
;	Rows                         	4
;	Alphabet                     	a|c|g|t
;	Prior                        	a:0.29085999082|c:0.208089935287|g:0.204758708047|t:0.296291365846
;	program                      	transfac
;	matrix.nb                    	1
;	accession                    	1
;	AC                           	1
;	id                           	1
;	name                         	1
;	description                  	TktTrckGAaTsA
;	min.prior                    	0.204759
;	alphabet.size                	4
;	max.bits                     	2
;	total.information            	6.61372
;	information.per.column       	0.508747
;	max.possible.info.per.col    	1.58592
;	consensus.strict             	TttTgctGAaTgA
;	consensus.strict.rc          	TCATTCAGCAAAA
;	consensus.IUPAC              	TktTrckGAaTsA
;	consensus.IUPAC.rc           	TSATTCMGYAAMA
;	consensus.regexp             	T[gt]tT[ag]c[gt]GAaT[cg]A
;	consensus.regexp.rc          	T[CG]ATTC[AC]G[CT]AA[AC]A
;	residues.content.crude.freq  	a:0.2885|c:0.0769|g:0.1731|t:0.4615
;	G+C.content.crude.freq       	0.25
;	residues.content.corrected.freq	a:0.2889|c:0.1032|g:0.1794|t:0.4285
;	G+C.content.corrected.freq   	0.28257
;	min(P(S|M))                  	1.38044e-18
;	max(P(S|M))                  	0.0050463
;	proba_range                  	0.0050463
;	Wmin                         	-21
;	Wmax                         	12.1
;	Wrange                       	33.1
; logo file:AsnC.2nt_upstream-noorf-ovlp-2str.13.meme_quality_logo_m1.png
; logo file:AsnC.2nt_upstream-noorf-ovlp-2str.13.meme_quality_logo_m1_rc.png
; Host name	compute-1-1.local
; Job started	2015-08-06.164341
; Job done	2015-08-06.164342
; Seconds	0.3
;	user	0.3
;	system	0.05
;	cuser	0.48
;	csystem	0.06
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