RegulonDB

Fis matrix and aligment

matrix-quality result

Command: 
Fis.1nt_upstream-noorf-ovlp-2str.15.cons_quality

Figures

Matrix logo

Decreasing cumulative distributions (dCDF)

Decreasing cumulative distributions (dCDF), logarithmic Y axis

ROC curve (logarithmic X axis)

Matrix information

; convert-matrix  -v 1 -from transfac -i Fis.1nt_upstream-noorf-ovlp-2str.15.cons_quality_logo
; Input files
;	input	Fis.1nt_upstream-noorf-ovlp-2str.15.cons_quality_matrix.tf
;	prior	Fis.1nt_upstream-noorf-ovlp-2str.15.cons_quality1nt_upstream-noorf_Escherichia_coli_K_12_substr__MG1655_uid57779-ovlp-1str.freq.gz_inclusive.tab
; Input format        	transfac
; Output files
;	output	Fis.1nt_upstream-noorf-ovlp-2str.15.cons_quality_matrix_info.txt
; Output format       	tab
; pseudo-weight       	1
; Background model
;	Bernoulli model (order=0)
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.29063
;		c	0.20784
;		g	0.20492
;		t	0.29662
A	13	52	35	19	128	111	118	202	116	98	16	82	80	53	30
C	3	58	41	53	12	15	24	0	14	15	50	39	26	57	167
G	178	46	41	66	49	24	27	12	20	20	13	65	56	57	17
T	20	58	97	76	25	64	45	0	64	81	135	28	52	47	0
//
a  0.1  0.2  0.2  0.1  0.6  0.5  0.6  0.9  0.5  0.5  0.1  0.4  0.4  0.2  0.1
c  0.0  0.3  0.2  0.2  0.1  0.1  0.1  0.0  0.1  0.1  0.2  0.2  0.1  0.3  0.8
g  0.8  0.2  0.2  0.3  0.2  0.1  0.1  0.1  0.1  0.1  0.1  0.3  0.3  0.3  0.1
t  0.1  0.3  0.5  0.4  0.1  0.3  0.2  0.0  0.3  0.4  0.6  0.1  0.2  0.2  0.0
//
a -1.5 -0.2 -0.6 -1.2  0.7  0.6  0.6  1.2  0.6  0.5 -1.3  0.3  0.3 -0.2 -0.7
c -2.6  0.3 -0.1  0.2 -1.3 -1.1 -0.6 -5.4 -1.1 -1.1  0.1 -0.1 -0.5  0.2  1.3
g  1.4  0.0 -0.1  0.4  0.1 -0.6 -0.5 -1.3 -0.8 -0.8 -1.2  0.4  0.2  0.3 -0.9
t -1.1 -0.1  0.4  0.2 -0.9  0.0 -0.3 -5.4  0.0  0.2  0.8 -0.8 -0.2 -0.3 -5.4
//
a -0.1 -0.0 -0.1 -0.1  0.4  0.3  0.4  1.1  0.3  0.2 -0.1  0.1  0.1 -0.0 -0.1
c -0.0  0.1 -0.0  0.0 -0.1 -0.1 -0.1 -0.0 -0.1 -0.1  0.0 -0.0 -0.1  0.1  1.0
g  1.2  0.0 -0.0  0.1  0.0 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1  0.1  0.1  0.1 -0.1
t -0.1 -0.0  0.2  0.1 -0.1  0.0 -0.1 -0.0  0.0  0.1  0.5 -0.1 -0.0 -0.1 -0.0
//
; Sites	214
>site_0
GAAATAAAAACGAGC
>site_1
GACAAAAAGATCATC
>site_2
GCCTGTAAAACATGC
>site_3
GTTTAAAAATTGTTA
>site_4
AGTCAAAATTTAAAC
>site_5
GTGGCTGAATCGTTA
>site_6
GATTAACACCTCGTC
>site_7
GCGTACGGGTAAACC
>site_8
GGGTGTTAAATAGCC
>site_9
GCAGCAAAAACCGGC
>site_10
GATTAAAAGATGAGC
>site_11
GCTGCAAAAATCGCC
>site_12
GATGCAAAAGTAGCC
>site_13
GGATAGAATATAATC
>site_14
AGTCAGAACTTCCTC
>site_15
GCAAAATGAACCGTC
>site_16
GACTGCAAAATAGTG
>site_17
GTCGATCAATTGAGA
>site_18
GCTGAACAAGTGAAC
>site_19
GCTCGAAAGTGACTG
>site_20
GCTTATGATTCGCAC
>site_21
GTGCTATACTTAATC
>site_22
GCGGAACACATAGCC
>site_23
GAGGAGTAATTATTG
>site_24
GAGTGAAAATCTACC
>site_25
GTTCGCTATATAGGC
>site_26
AAATAAAAAATCCAC
>site_27
GCACATAATACGCCC
>site_28
GCCTGAAAAACAGCC
>site_29
GTGCAAAAGTTTCAC
>site_30
GTTTAAAATATGTTC
>site_31
GAAGTTTGAATAAAC
>site_32
GGCGGTGAACTTTAC
>site_33
GGGCGGTGAATAACC
>site_34
GTTGCACATTTTGAC
>site_35
GAGTAAAATAATTCA
>site_36
GTGTAATAAATAAAG
>site_37
GTTTATTATTTGAGC
>site_38
GCTGAAAAGATAGGC
>site_39
GGTTATTAACATAGC
>site_40
GTTTTACAACTATTA
>site_41
GTTTGATATTTATCA
>site_42
GGCTAAAAAATAGAA
>site_43
GAACGAAAAATCAGC
>site_44
TGATGTAAATCAAAC
>site_45
GGCTGTTAATTATCC
>site_46
GGATGAAAAATAAAG
>site_47
ACGGATGAAAATTAC
>site_48
ACCAGTTATTTTTGC
>site_49
AAAGAATAATCGTTC
>site_50
GTTTGAGATTACTAC
>site_51
GGTAATAATAGAGCC
>site_52
GCACAAAATAAAGAA
>site_53
AGCCAGAAAAGACGC
>site_54
GAGGTTAAAACTTCC
>site_55
TCTCGTAAACACAAC
>site_56
GATGAAAAGTAGAAC
>site_57
GTGCAAAACATGCTA
>site_58
TGCTATCATTCGTTA
>site_59
TAGCCATAAATAAGG
>site_60
GACAAATATACCACG
>site_61
GCCAGTAAGGCGCTC
>site_62
GCTAATAAAGTTGCG
>site_63
CCTGATAAAATCCGA
>site_64
TTTCGTCAATCTGGC
>site_65
GCTTGACATTCGACC
>site_66
GCCTGTAGGCCAAGA
>site_67
TCACGAAAATTCAGG
>site_68
GGGGTTGATATCCGC
>site_69
GTTACCGATATGGAC
>site_70
GTTGATAAACCTTCC
>site_71
GAATAGTAAGTACCC
>site_72
GACGAAAAATTCTGG
>site_73
GTTGTAAAAATGTGA
>site_74
AATGGATAAGAAGCA
>site_75
ATCGATAAAGTAAGC
>site_76
TTTTGTTATTTAAAC
>site_77
GAATAATATTTTTTC
>site_78
GAACAAAACTTGAAC
>site_79
GAGGTACAAATAATA
>site_80
TGTTACAAATTTATC
>site_81
GGTGGTTAATCATGC
>site_82
TATTAATAAATAAAG
>site_83
GCGAGGAAAACAATC
>site_84
GGTCAAAAAACTCTC
>site_85
GGACGGAATATGAAC
>site_86
GCTTGAAAAAGCGCC
>site_87
GTGGTTAAAACGTCA
>site_88
GTATTTAAAATGCAA
>site_89
TGCTAAAAAGTAACC
>site_90
GATTTATAATTAATC
>site_91
GCGTATAGGTTTACC
>site_92
GAATAGAAAACAACC
>site_93
GACCACAACTGATAC
>site_94
GATTAATAAGCCATC
>site_95
GTTCAAGAAATCGCC
>site_96
GAGAAAAATTTGTTA
>site_97
AATCATAAATAAGAC
>site_98
GTTAAGAAAACATTC
>site_99
TTAAATAAGATTTAC
>site_100
GCTCATAATTCGAAA
>site_101
TTTTACCATTTAGCC
>site_102
TAACAAAAACGCAGC
>site_103
GGCGATTATTTGTGC
>site_104
GGTTGAAAAATGAAC
>site_105
CCTCGCCATTTATGC
>site_106
GCTGAAAAATCAGGC
>site_107
GTTGACAAATTGCGC
>site_108
GATCGCAAAACAGAC
>site_109
GTCGTAAATTTAAGC
>site_110
GGTCGAGATATTGCC
>site_111
GGTTAATAAATATTG
>site_112
GCTCTGTATAATGCC
>site_113
GAGGAGTATATATAC
>site_114
GTGTGAAATTTTACC
>site_115
GTCTAAAAAATGAGC
>site_116
GCCTGAAAAGTGAGC
>site_117
ATCTTAAATATAGTC
>site_118
GTCTATAAGTTAGAC
>site_119
GGCCGAAATTTGCTC
>site_120
GCTGATTAATTCGCC
>site_121
CTCCAAAATATATTC
>site_122
GCCGTTTAATTCTTC
>site_123
GATGATAGATTGTGC
>site_124
GCTTAATAACTGTTC
>site_125
GCTAAAGAGATAGAC
>site_126
GGAAAAAAAATGGTC
>site_127
GAATGAAAGATGAAC
>site_128
GTGCAAAATAACAAC
>site_129
GCTGACCAGACAGTC
>site_130
GATTGGAATGCGCAA
>site_131
GCGGAATGCTTCGTC
>site_132
GCTGAAGACCGCATC
>site_133
GGACGTAAAATCTGC
>site_134
GTTTATCAGACAAGC
>site_135
GTTGCTTAATTGATC
>site_136
GCTTATAATGCGATC
>site_137
GGTGAACACCCAAAC
>site_138
GCCGATTATTTACGC
>site_139
GACTAAAATTTACAC
>site_140
TATGAGTAATTATCG
>site_141
GCATTTAAAATGAGC
>site_142
GGTCAAAGTTTGGCC
>site_143
AGTTAAGAAATGACC
>site_144
GGTGAAAAAACAACA
>site_145
GTGTGCGATTGCAGC
>site_146
TACTAAAAGACTTGC
>site_147
GGCCAATAATGCCCC
>site_148
GTAAATCATTTATTG
>site_149
GGTTAGTACGCGTAC
>site_150
GTACTGCATGTATGC
>site_151
GGACGTCACATTACC
>site_152
GGCTATCAACTGTAC
>site_153
GTGCAAAAAATAGAC
>site_154
TAAGAAAATTTATAC
>site_155
GAGGCAAAAATGAGC
>site_156
GCGGATAAATCCTAC
>site_157
TTTTATAATATAAAC
>site_158
GTTTTTAATATTATC
>site_159
GTAATAAAAATCGCC
>site_160
GGCGAGAAAGTCAGC
>site_161
GGTCATAAATCAAGA
>site_162
TTTTAATAAGTAACA
>site_163
GGCGAAGATTTCGCC
>site_164
GTCGTAAAGCTGTTA
>site_165
GGCTAACAATTTGCC
>site_166
GTTGTGGAAATGATG
>site_167
GCGCGATAAATCGCC
>site_168
GCTGAGGAAACGACC
>site_169
GTCTATAACGTGTTC
>site_170
GCTTAAAAGCGACGC
>site_171
GCAGAGAAAATAGCA
>site_172
GATAAAAATATGACC
>site_173
GTTGCAAAAACGGCA
>site_174
TGCCATAAAACAAGC
>site_175
GCTGAAAAAATGCGC
>site_176
GGTTACGGTTTGTGC
>site_177
GTGTTAAAAATATGC
>site_178
GTGGCGAATTTCGCC
>site_179
GTCGGTTAAATGGGC
>site_180
GACGCTGAAATAAGC
>site_181
GAATAAAAAATGCGC
>site_182
GCGCATGATAACGCC
>site_183
AAATAGGAATTCATC
>site_184
GCTGAACAATTATTG
>site_185
GCTCGAAAAACTGGC
>site_186
GCGCAACATTCAACC
>site_187
GTTGAAAAAGTGTGC
>site_188
GATGAAGAAACAGCC
>site_189
GCATAAAATGTGACC
>site_190
GGTCGCGAAATGAGC
>site_191
GAGCAAGAATGGGAC
>site_192
GTGCGAAGAACGCGA
>site_193
GCTGAAAAATTATAC
>site_194
GATCACAATTTTGAC
>site_195
GGGCAAAATACAGAA
>site_196
GTGGATAACTCTGTG
>site_197
GTGCGTAAAAAGGTA
>site_198
GCTGGGGAATGCAGC
>site_199
TATGAAAATAAAAAC
>site_200
GCACATAAAATCGCC
>site_201
GTTTAGTATTTGGGC
>site_202
GCCGTTTATTTGCAC
>site_203
GTGTAACAAATAACC
>site_204
GGTCATTAACTGCCC
>site_205
GGTTAAGGAATGTAC
>site_206
GCTTAAGATTGCGGC
>site_207
GGTCTAAAGTAAAAC
>site_208
GATTAAAAAGCAGAC
>site_209
GCTGAAAATTTCAGC
>site_210
GCTGGAAAAATGTCC
>site_211
GATCTATATTTAACA
>site_212
GATTGTCATTCTACC
>site_213
GTGAATTATTTGAAC
;
; Matrix parameters
;	Columns                      	15
;	Rows                         	4
;	Alphabet                     	a|c|g|t
;	Prior                        	a:0.2906296|c:0.2078359|g:0.2049154|t:0.2966191
;	program                      	transfac
;	matrix.nb                    	1
;	accession                    	Fis.1nt_upstream-noorf-ovlp-2str.15.cons1
;	AC                           	Fis.1nt_upstream-noorf-ovlp-2str.15.cons1
;	id                           	Fis.1nt_upstream-noorf-ovlp-2str.15.cons1
;	name                         	Fis.1nt_upstream-noorf-ovlp-2str.15.cons1
;	description                  	GstbrwaAwwyrrsC
;	statistical_basis            	214 sequences
;	sites                        	214
;	min.prior                    	0.204915
;	alphabet.size                	4
;	max.bits                     	2
;	total.information            	4.39634
;	information.per.column       	0.29309
;	max.possible.info.per.col    	1.58516
;	consensus.strict             	GctgaaaAaatgagC
;	consensus.strict.rc          	GCTCATTTTTTCAGC
;	consensus.IUPAC              	GstbrwaAwwyrrsC
;	consensus.IUPAC.rc           	GSYYRWWTTWYVASC
;	consensus.regexp             	G[cg]t[cgt][ag][at]aA[at][at][ct][ag][ag][cg]C
;	consensus.regexp.rc          	G[CG][CT][CT][AG][AT][AT]TT[AT][CT][ACG]A[CG]C
;	residues.content.crude.freq  	a:0.3592|c:0.1788|g:0.2153|t:0.2467
;	G+C.content.crude.freq       	0.394081
;	residues.content.corrected.freq	a:0.3589|c:0.1790|g:0.2152|t:0.2470
;	G+C.content.corrected.freq   	0.394168
;	min(P(S|M))                  	2.88561e-20
;	max(P(S|M))                  	2.65607e-05
;	proba_range                  	2.65607e-05
;	Wmin                         	-23.6
;	Wmax                         	9.7
;	Wrange                       	33.3
; logo file:Fis.1nt_upstream-noorf-ovlp-2str.15.cons_quality_logo_m1.png
; logo file:Fis.1nt_upstream-noorf-ovlp-2str.15.cons_quality_logo_m1_rc.png
; Host name	compute-1-3.local
; Job started	2015-08-06.164357
; Job done	2015-08-06.164359
; Seconds	0.33
;	user	0.33
;	system	0.04
;	cuser	0.53
;	csystem	0.06
RegulonDB