Regulon DB MATRIX QUALITY EVALUATION
RegulonDB

Position specific scoring matrices for TFs, version 3.0


Description of the dataset:

PSSMs are built using the annotated binding sites of TFs from RegulonDB version 7.4. A matrix is built for all TFs with four or more annotated sites. Each matrix is shown with theoretical and empirical quality assessment.

Citation:

Dataset provided and maintained by RegulonDB (PUBMED: #21051347) from the original source published in: Medina-Rivera et al. Theoretical and empirical quality assessment of transcription factor-binding motifs. Nucleic Acids Research (2011) vol. 39 (3) pp. 808-824 (PubMed: 20923783)

Tutorial:

Details of the evaluation process of the RegulonDB matrices can be download from this PDF.

TF Name Matrix type Width Background model Logo Score distributions logY ROC curves logX Score distributions Info matrix quality
AcrR consensus 10 1nt_upstream [png] [png] [png] [png] Info matrix
Ada meme 19 1nt_upstream [png] [png] [png] [png] Info matrix
AgaR consensus 20 1nt_upstream [png] [png] [png] [png] Info matrix
AraC consensus 17 1nt_upstream [png] [png] [png] [png] Info matrix
ArcA consensus 17 1nt_upstream [png] [png] [png] [png] Info matrix
ArgP consensus 18 1nt_upstream [png] [png] [png] [png] Info matrix
ArgR meme 18 1nt_upstream [png] [png] [png] [png] Info matrix
AscG consensus 12 1nt_upstream [png] [png] [png] [png] Info matrix
AsnC meme 13 1nt_upstream [png] [png] [png] [png] Info matrix
BaeR consensus 18 1nt_upstream [png] [png] [png] [png] Info matrix
BasR meme 19 1nt_upstream [png] [png] [png] [png] Info matrix
CRP meme 22 1nt_upstream [png] [png] [png] [png] Info matrix
CaiF meme 14 1nt_upstream [png] [png] [png] [png] Info matrix
CpxR consensus 14 1nt_upstream [png] [png] [png] [png] Info matrix
Cra consensus 16 1nt_upstream [png] [png] [png] [png] Info matrix
CsgD meme 17 1nt_upstream [png] [png] [png] [png] Info matrix
CysB meme 38 1nt_upstream [png] [png] [png] [png] Info matrix
CytR meme 18 1nt_upstream [png] [png] [png] [png] Info matrix
Dan meme 7 1nt_upstream [png] [png] [png] [png] Info matrix
DcuR consensus 17 1nt_upstream [png] [png] [png] [png] Info matrix
DeoR consensus 19 1nt_upstream [png] [png] [png] [png] Info matrix
DnaA meme 11 1nt_upstream [png] [png] [png] [png] Info matrix
EvgA meme 17 1nt_upstream [png] [png] [png] [png] Info matrix
ExuR consensus 17 1nt_upstream [png] [png] [png] [png] Info matrix
FNR meme 14 1nt_upstream [png] [png] [png] [png] Info matrix
FadR meme 18 1nt_upstream [png] [png] [png] [png] Info matrix
FeaR meme 16 1nt_upstream [png] [png] [png] [png] Info matrix
FhlA meme 15 1nt_upstream [png] [png] [png] [png] Info matrix
Fis consensus 15 1nt_upstream [png] [png] [png] [png] Info matrix
FlhDC meme 16 1nt_upstream [png] [png] [png] [png] Info matrix
Fur meme 18 1nt_upstream [png] [png] [png] [png] Info matrix
GadE meme 18 1nt_upstream [png] [png] [png] [png] Info matrix
GadW consensus 20 1nt_upstream [png] [png] [png] [png] Info matrix
GadX consensus 21 1nt_upstream [png] [png] [png] [png] Info matrix
GalR meme 15 1nt_upstream [png] [png] [png] [png] Info matrix
GalS meme 15 1nt_upstream [png] [png] [png] [png] Info matrix
GcvA consensus 11 1nt_upstream [png] [png] [png] [png] Info matrix
GlpR consensus 19 1nt_upstream [png] [png] [png] [png] Info matrix
GntR meme 18 1nt_upstream [png] [png] [png] [png] Info matrix
HNS meme 13 1nt_upstream [png] [png] [png] [png] Info matrix
HipAB consensus 28 1nt_upstream [png] [png] [png] [png] Info matrix
HipB meme 31 1nt_upstream [png] [png] [png] [png] Info matrix
IHF consensus 13 1nt_upstream [png] [png] [png] [png] Info matrix
IclR consensus 11 1nt_upstream [png] [png] [png] [png] Info matrix
IscR consensus 20 1nt_upstream [png] [png] [png] [png] Info matrix
LeuO meme 19 1nt_upstream [png] [png] [png] [png] Info matrix
LexA consensus 20 1nt_upstream [png] [png] [png] [png] Info matrix
Lrp meme 15 1nt_upstream [png] [png] [png] [png] Info matrix
MalT consensus 10 1nt_upstream [png] [png] [png] [png] Info matrix
MarA meme 19 1nt_upstream [png] [png] [png] [png] Info matrix
MelR consensus 18 1nt_upstream [png] [png] [png] [png] Info matrix
MetJ meme 16 1nt_upstream [png] [png] [png] [png] Info matrix
MetR consensus 16 1nt_upstream [png] [png] [png] [png] Info matrix
Mlc consensus 23 1nt_upstream [png] [png] [png] [png] Info matrix
MlrA consensus 33 1nt_upstream [png] [png] [png] [png] Info matrix
MntR meme 21 1nt_upstream [png] [png] [png] [png] Info matrix
ModE consensus 24 1nt_upstream [png] [png] [png] [png] Info matrix
MqsA consensus 14 1nt_upstream [png] [png] [png] [png] Info matrix
MraZ meme 8 1nt_upstream [png] [png] [png] [png] Info matrix
Nac meme 17 1nt_upstream [png] [png] [png] [png] Info matrix
NagC meme 22 1nt_upstream [png] [png] [png] [png] Info matrix
NanR meme 7 1nt_upstream [png] [png] [png] [png] Info matrix
NarL meme 18 1nt_upstream [png] [png] [png] [png] Info matrix
NarP meme 17 1nt_upstream [png] [png] [png] [png] Info matrix
NhaR meme 15 1nt_upstream [png] [png] [png] [png] Info matrix
NrdR meme 15 1nt_upstream [png] [png] [png] [png] Info matrix
NsrR consensus 14 1nt_upstream [png] [png] [png] [png] Info matrix
NtrC meme 18 1nt_upstream [png] [png] [png] [png] Info matrix
OmpR consensus 19 1nt_upstream [png] [png] [png] [png] Info matrix
OxyR meme 20 1nt_upstream [png] [png] [png] [png] Info matrix
PdhR meme 16 1nt_upstream [png] [png] [png] [png] Info matrix
PhoB meme 22 1nt_upstream [png] [png] [png] [png] Info matrix
PhoP meme 17 1nt_upstream [png] [png] [png] [png] Info matrix
PurR consensus 16 1nt_upstream [png] [png] [png] [png] Info matrix
PutA consensus 9 1nt_upstream [png] [png] [png] [png] Info matrix
PuuR meme 16 1nt_upstream [png] [png] [png] [png] Info matrix
RcdA consensus 12 1nt_upstream [png] [png] [png] [png] Info matrix
RcsAB consensus 15 1nt_upstream [png] [png] [png] [png] Info matrix
RcsB consensus 14 1nt_upstream [png] [png] [png] [png] Info matrix
RcsBBglJ meme 20 1nt_upstream [png] [png] [png] [png] Info matrix
RelBRelE consensus 13 1nt_upstream [png] [png] [png] [png] Info matrix
RhaS meme 17 1nt_upstream [png] [png] [png] [png] Info matrix
Rob meme 17 1nt_upstream [png] [png] [png] [png] Info matrix
RstA consensus 14 1nt_upstream [png] [png] [png] [png] Info matrix
RutR consensus 16 1nt_upstream [png] [png] [png] [png] Info matrix
SlyA meme 11 1nt_upstream [png] [png] [png] [png] Info matrix
SoxS meme 18 1nt_upstream [png] [png] [png] [png] Info matrix
TorR consensus 9 1nt_upstream [png] [png] [png] [png] Info matrix
TrpR meme 16 1nt_upstream [png] [png] [png] [png] Info matrix
TyrR meme 17 1nt_upstream [png] [png] [png] [png] Info matrix
UlaR meme 17 1nt_upstream [png] [png] [png] [png] Info matrix
UxuR meme 16 1nt_upstream [png] [png] [png] [png] Info matrix
XylR consensus 16 1nt_upstream [png] [png] [png] [png] Info matrix


RegulonDB