RegulonDB RegulonDB 11.1: Gene Form
   

rhsE gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

rhsE ydcD yncH yncO TSS_1825 TSS_1825

Gene      
Name: rhsE    Texpresso search in the literature
Synonym(s): ECK1450, EG10010, b1456
Type: Pseudo Gene
Genome position(nucleotides): 1527890 --> 1529938
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 58.17
External database links:  
ASAP:
 ABE-0004858
CGSC:
 33720
ECHOBASE:
 EB0010
ECOLIHUB:
 rhsE
OU-MICROARRAY:
 b1456
STRING:
 316407.1742368
COLOMBOS: rhsE


Product      
Name: RhsE protein in rhs element
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 6.198
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
Reference(s): [1] Lin RJ., et al., 1984
External database links:  
ALPHAFOLD:
 P24211
DIP:
 DIP-10703N
ECOCYC:
 EG10010-MONOMER
ECOLIWIKI:
 b1456
INTERPRO:
 IPR001826
INTERPRO:
 IPR022385
MINT:
 MINT-1319693
PFAM:
 PF03527
PRIDE:
 P24211
PRINTS:
 PR00394
REFSEQ:
 NP_415973
UNIPROT:
 P24211


Operon      
Name: rhsE-ydcD         
Operon arrangement:
Transcription unit        Promoter
rhsE-ydcD


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1825 1530150 forward nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Lin RJ., Capage M., Hill CW., 1984, A repetitive DNA sequence, rhs, responsible for duplications within the Escherichia coli K-12 chromosome., J Mol Biol 177(1):1-18

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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