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|
| Gene |  |
|
|---|---|---|
| Name: | yhfA  |
|
| Synonym(s): | ECK3344, EG11182, b3356 | |
| Genome position(nucleotides): | 3485414 <-- 3485818 Genome Browser | |
| Strand: | reverse | |
| Sequence: | Get nucleotide sequence FastaFormat | |
GC content %: |
51.6 | |
| External database links: | ||
ASAP: |
ABE-0010964 | |
ECHOBASE: |
EB1169 | |
ECOLIHUB: |
yhfA | |
OU-MICROARRAY: |
b3356 | |
STRING: |
511145.b3356 | |
| COLOMBOS: | yhfA |
| Product | |
|||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Name: | OsmC family protein YhfA | |||||||||
| Synonym(s): | YhfA | |||||||||
| Sequence: | Get amino acid sequence Fasta Format | |||||||||
| Cellular location: | cytosol | |||||||||
| Molecular weight: | 14.517 | |||||||||
| Isoelectric point: | 5.614 | |||||||||
| Motif(s): | ||||||||||
|
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| Classification: |
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| Note(s): | Note(s): ...[more]. | |||||||||
| External database links: | ||||||||||
DIP: |
DIP-48201N | |||||||||
ECOCYC: |
EG11182-MONOMER | |||||||||
ECOLIWIKI: |
b3356 | |||||||||
INTERPRO: |
IPR015946 | |||||||||
INTERPRO: |
IPR036102 | |||||||||
INTERPRO: |
IPR003718 | |||||||||
MODBASE: |
P0ADX1 | |||||||||
PDB: |
1ML8 | |||||||||
PFAM: |
PF02566 | |||||||||
PRIDE: |
P0ADX1 | |||||||||
REFSEQ: |
NP_417815 | |||||||||
SMR: |
P0ADX1 | |||||||||
SWISSMODEL: |
P0ADX1 | |||||||||
UNIPROT: |
P0ADX1 | |||||||||
| RNA cis-regulatory element | |
|---|---|
| Attenuation: | Translational |
| Elements in the selected gene context region unrelated to any object in RegulonDB | |
|---|
| Type | Name | Post Left | Post Right | Strand | Notes | Evidence (Confirmed, Strong, Weak) | References | |
|---|---|---|---|---|---|---|---|---|
| promoter | TSS_3953 (cluster) | 3485846 | reverse | nd | [RS-EPT-CBR] | [1] | ||
| promoter | TSS_3954 | 3485952 | reverse | nd | [RS-EPT-CBR] | [1] | ||
| promoter | TSS_3956 | 3486049 | forward | nd | [RS-EPT-CBR] | [1] | ||
| promoter | TSS_3957 (cluster) | 3486051 | forward | nd | [RS-EPT-CBR] | [1] | ||
| promoter | TSS_3958 | 3486110 | forward | nd | [RS-EPT-CBR] | [1] | ||
| promoter | TSS_3959 | 3486595 | forward | nd | [RS-EPT-CBR] | [1] | ||
| promoter | TSS_3960 (cluster) | 3486615 | forward | nd | [RS-EPT-CBR] | [1] | ||
| promoter | TSS_3961 (cluster) | 3486621 | forward | nd | [RS-EPT-CBR] | [1] |
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates