RegulonDB RegulonDB 10.10: Gene Form
   

waaC gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

waaL waaF waaC yibX yibY

Gene      
Name: waaC    Texpresso search in the literature
Synonym(s): ECK3611, EG11189, b3621, rfa-2, rfaC, yibC
Genome position(nucleotides): 3795979 --> 3796938 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 51.04
External database links:  
ASAP:
 ABE-0011847
CGSC:
 300
ECHOBASE:
 EB1175
ECOLIHUB:
 rfaC
NCBI-GENE:
 948136
OU-MICROARRAY:
 b3621
STRING:
 511145.b3621
COLOMBOS: waaC


Product      
Name: ADP-heptose:LPS heptosyltransferase 1
Synonym(s): ADP-heptose:LPS heptosyltransferase I, RfaC, WaaC, YibC
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol,inner membrane
Molecular weight: 35.544
Isoelectric point: 9.443
Motif(s):
 
Type Positions Sequence
76 -> 315 KAFREALQAENYDAVIDAQGLVKSAALVTRLAHGVKHGMDWQTAREPLASLFYNRKHHIAKQQHAVERTRELFAKSLGYSKPQTQGDYAIAQHFLTNLPTDAGEYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGAPHEEERAKRLAEGFAYVEVLPKMSLEGVARVLAGAKFVVSVDTGLSHLTAALDRPNITVYGPTDPGLIGGYGKNQMVCRAPRENLINLNSQAVLEK

 
Classification:
Multifun Terms (GenProtEC)  
  1 - metabolism --> 1.6 - biosynthesis of macromolecules (cellular constituents) --> 1.6.3 - lipopolysaccharide --> 1.6.3.2 - core region
  6 - cell structure --> 6.3 - surface antigens (ECA, O antigen of LPS)
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
GO:0005886 - plasma membrane
molecular_function GO:0005515 - protein binding
GO:0016757 - glycosyltransferase activity
GO:0016740 - transferase activity
GO:0008920 - lipopolysaccharide heptosyltransferase activity
GO:0008713 - ADP-heptose-lipopolysaccharide heptosyltransferase activity
biological_process GO:0009103 - lipopolysaccharide biosynthetic process
GO:0009244 - lipopolysaccharide core region biosynthetic process
Note(s): Note(s): ...[more].
External database links:  
CAZY:
 GT9
ECOCYC:
 EG11189-MONOMER
ECOLIWIKI:
 b3621
INTERPRO:
 IPR011908
INTERPRO:
 IPR002201
MODBASE:
 P24173
PDB:
 2H1H
PFAM:
 PF01075
PRIDE:
 P24173
PRODB:
 PRO_000023717
REFSEQ:
 NP_418078
SMR:
 P24173
UNIPROT:
 P24173


Operon      
Name: rfaD-waaFCL         
Operon arrangement:
Transcription unit        Promoter
rfaDFCL
rfaDFCL
rfaDFCL
rfaDFCL


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References



RegulonDB