RegulonDB RegulonDB 10.10: Gene Form
   

yjaA gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yjaB yjaA rrfE terminator yjaAp3 yjaAp3 yjaAp4 yjaAp4

Gene      
Name: yjaA    Texpresso search in the literature
Synonym(s): ECK4003, EG11206, b4011
Genome position(nucleotides): 4213234 --> 4213617 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
45.31
External database links:  
ASAP:
ABE-0013112
ECHOBASE:
EB1191
ECOLIHUB:
yjaA
OU-MICROARRAY:
b4011
STRING:
511145.b4011
COLOMBOS: yjaA


Product      
Name: stress response protein
Synonym(s): YjaA
Sequence: Get amino acid sequence Fasta Format
Cellular location: membrane
Molecular weight: 14.447
Isoelectric point: 9.721
Classification:
Multifun Terms (GenProtEC)  
  5 - cell processes --> 5.5 - adaptations --> 5.5.4 - pH
  5 - cell processes --> 5.5 - adaptations --> 5.5.6 - other (mechanical, nutritional, oxidative stress)
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
biological_process GO:0070301 - cellular response to hydrogen peroxide
GO:0044011 - single-species biofilm formation on inanimate substrate
GO:0071468 - cellular response to acidic pH
Note(s): Note(s): ...[more].
Evidence: [IMP] Inferred from mutant phenotype
Reference(s): [1] Lee J., et al., 2010
External database links:  
ECOCYC:
EG11206-MONOMER
ECOLIWIKI:
b4011
PRIDE:
P09162
REFSEQ:
NP_418435
UNIPROT:
P09162


Operon      
Name: yjaA         
Operon arrangement:
Transcription unit        Promoter
yjaA


RNA cis-regulatory element    
Attenuation: Transcriptional


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yjaAp4 4213120 forward nd [ICWHO] [2]
  promoter yjaAp3 4213224 forward nd [ICWHO] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Lee J., Hiibel SR., Reardon KF., Wood TK., 2010, Identification of stress-related proteins in Escherichia coli using the pollutant cis-dichloroethylene., J Appl Microbiol 108(6):2088-102

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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