RegulonDB RegulonDB 10.8: Gene Form
   

loiP gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

tktA speB loiP terminator anti-terminator anti-anti-terminator loiPp loiPp TSS_3262 TSS_3262 tktAp1 tktAp1

Gene      
Name: loiP    Texpresso search in the literature
Synonym(s): ECK2931, EG11291, b2936, yggG
Genome position(nucleotides): 3081913 --> 3082671 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
51.52
External database links:  
ASAP:
ABE-0009629
ECHOBASE:
EB1268
OU-MICROARRAY:
b2936
PortEco:
yggG
STRING:
511145.b2936
COLOMBOS: loiP


Product      
Name: metalloprotease LoiP
Synonym(s): LoiP, YggG
Sequence: Get amino acid sequence Fasta Format
Cellular location: outer membrane
Molecular weight: 26.842
Isoelectric point: 6.02
Motif(s):
 
Type Positions Sequence
19 -> 252 CQNMDSNGLLSSGAEAFQAYSLSDAQVKTLSDQACQEMDSKATIAPANSEYAKRLTTIANALGNNINGQPVNYKVYMAKDVNAFAMANGCIRVYSGLMDMMTDNEVEAVIGHEMGHVALGHVKKGMQVALGTNAVRVAAASAGGIVGSLSQSQLGNLGEKLVNSQFSQRQEAEADDYSYDLLRQRGISPAGLATSFEKLAKLEEGRQSSMFDDHPASAERAQHIRDRMSADGIK
1 -> 18 MKIRALLVAMSVATVLTG
71 -> 245 KRLTTIANALGNNINGQPVNYKVYMAKDVNAFAMANGCIRVYSGLMDMMTDNEVEAVIGHEMGHVALGHVKKGMQVALGTNAVRVAAASAGGIVGSLSQSQLGNLGEKLVNSQFSQRQEAEADDYSYDLLRQRGISPAGLATSFEKLAKLEEGRQSSMFDDHPASAERAQHIRDR

 

Classification:
Multifun Terms (GenProtEC)  
  5 - cell processes --> 5.5 - adaptations
Gene Ontology Terms (GO)  
cellular_component GO:0009279 - cell outer membrane
GO:0016020 - membrane
molecular_function GO:0005515 - protein binding
GO:0008233 - peptidase activity
GO:0016787 - hydrolase activity
GO:0046872 - metal ion binding
GO:0004222 - metalloendopeptidase activity
GO:0008237 - metallopeptidase activity
biological_process GO:0071476 - cellular hypotonic response
GO:0006508 - proteolysis
GO:0034605 - cellular response to heat
GO:0034644 - cellular response to UV
Note(s): Note(s): ...[more].
External database links:  
DIP:
DIP-12186N
ECOCYC:
EG11291-MONOMER
ECOLIWIKI:
b2936
INTERPRO:
IPR001915
MINT:
MINT-1288575
PFAM:
PF01435
PRIDE:
P25894
PROSITE:
PS51257
REFSEQ:
NP_417411
SMR:
P25894
UNIPROT:
P25894


Operon      
Name: loiP         
Operon arrangement:
Transcription unit        Promoter
yggG


RNA cis-regulatory element    
Attenuation: Transcriptional


Regulation by small RNA    
  Display Regulation
small RNA ryhB


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_3262 3081715 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


RegulonDB