RegulonDB

Gene
Name:	waaU
Synonym(s):	ECK3613, EG11423, b3623, rfaK
Genome position(nucleotides):	3798239 <-- 3799312 Genome Browser
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	31.01
External database links:

ASAP:	ABE-0011851
CGSC:	33791
ECHOBASE:	EB1393
ECOLIHUB:	waaU
NCBI-GENE:	948147
OU-MICROARRAY:	b3623
STRING:	511145.b3623
COLOMBOS:	waaU

Product

Name:

putative ADP-heptose:LPS heptosyltransferase 4

Synonym(s):

ADP-L-glycero-beta;-D-manno-heptose:LPS heptosyltransferase IV, RfaK, WaaU, heptosyl transferase IV, putative UDP-N-acetyl-D-glucosaminyl transferase

Sequence:

Get amino acid sequence Fasta Format

Cellular location:

cytosol,membrane

Molecular weight:

41.729

Isoelectric point:

8.843

Motif(s):

Type	Positions	Sequence
	227 -> 235	EQIKVIYQE
	274 -> 331	VALTKYSDFVISVDTALVHIAAAYHKPTLAFYPNSRTPEYPSHLIWSPNHHKSIQIVS
	261 -> 269	EIETLPFDE
	293 -> 293	I

Classification:

Multifun Terms (GenProtEC)
		1 - metabolism --> 1.6 - biosynthesis of macromolecules (cellular constituents) --> 1.6.3 - lipopolysaccharide --> 1.6.3.2 - core region
		6 - cell structure --> 6.3 - surface antigens (ECA, O antigen of LPS)
Gene Ontology Terms (GO)
	cellular_component	GO:0005829 - cytosol GO:0016020 - membrane
	molecular_function	GO:0016757 - transferase activity, transferring glycosyl groups GO:0016740 - transferase activity GO:0008917 - lipopolysaccharide N-acetylglucosaminyltransferase activity GO:0008713 - ADP-heptose-lipopolysaccharide heptosyltransferase activity
	biological_process	GO:0009103 - lipopolysaccharide biosynthetic process GO:0009244 - lipopolysaccharide core region biosynthetic process

Note(s):

Note(s): ...[more].

External database links:

CAZY:

DIP:

ECOCYC:

ECOLIWIKI:

INTERPRO:

MODBASE:

PFAM:

PRIDE:

PRODB:

REFSEQ:

SMR:

UNIPROT:

Operon

Name:

rirA-waaQGPSBOJYZU

Operon arrangement:

Transcription unit	Promoter
rfaYZ	waaYp
rfaQGPSBIJYZ-waaU	waaQp
rirA-rfaQGPSBIJYZ-waaU	rirAp
rfaZ-waaU	waaZp

Elements in the selected gene context region unrelated to any object in RegulonDB

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	waaUp9	3799398	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 7.48. P-value: 7.449e-7 Read more >	[ICWHO]	[1]
promoter	waaUp5	3799424	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 3.95. P-value: 4.108e-5 Read more >	[ICWHO]	[1]
promoter	waaUp6	3799496	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 4.224. P-value: 2.123e-5 Read more >	[ICWHO]	[1]
promoter	waaUp8	3799498	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 5.118. P-value: 1.670e-5 Read more >	[ICWHO]	[1]