RegulonDB RegulonDB 10.10: Gene Form
   

rpnA gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

rpnA bioH feoC GntR CRP terminator anti-terminator gntXp gntXp yhgAp6 yhgAp6

Gene      
Name: rpnA    Texpresso search in the literature
Synonym(s): ECK3398, EG11750, b3411, yhgA
Genome position(nucleotides): 3543167 --> 3544045 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
47.55
External database links:  
ASAP:
ABE-0011134
ECHOBASE:
EB1700
ECOLIHUB:
yhgA
OU-MICROARRAY:
b3411
STRING:
511145.b3411
COLOMBOS: rpnA


Product      
Name: recombination-promoting nuclease RpnA
Synonym(s): RpnA, YhgA
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 33.267
Isoelectric point: 6.351
Motif(s):
 
Type Positions Sequence
8 -> 209 TPHDALFKLFLRQPDTARDFLAFHLPAPIHALCDMKTLKLESSSFIDDDLRESYSDVLWSVKTEQGPGYIYCLIEHQSTSNKLIAFRMMRYAIAAMQNHLDAGYKTLPMVVPLLFYHGIESPYPYSLCWLDCFADPKLARQLYASAFPLIDVTVMPDDEIMQHRRMALLELIQKHIRQRDLMGLVEQMACLLSSGYANDRQI
84 -> 84 Q
82 -> 82 E
165 -> 165 D
11 -> 11 D

 

Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.3 - transposon related
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0004518 - nuclease activity
GO:0004519 - endonuclease activity
GO:0016787 - hydrolase activity
GO:0016888 - endodeoxyribonuclease activity, producing 5'-phosphomonoesters
GO:1990238 - double-stranded DNA endodeoxyribonuclease activity
biological_process GO:0006310 - DNA recombination
GO:0090305 - nucleic acid phosphodiester bond hydrolysis
Note(s): Note(s): ...[more].
External database links:  
DIP:
DIP-12335N
ECOCYC:
EG11750-MONOMER
ECOLIWIKI:
b3411
INTERPRO:
IPR006842
INTERPRO:
IPR010106
PFAM:
PF04754
PRIDE:
P31667
REFSEQ:
NP_417870
UNIPROT:
P31667


Operon      
Name: rpnA         
Operon arrangement:
Transcription unit        Promoter
rpnA


RNA cis-regulatory element    
Attenuation: Transcriptional


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yhgAp6 3543147 forward nd [ICWHO] [1]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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