RegulonDB RegulonDB 11.1: Gene Form
   

ydcD gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

rhsE yncI ydcD yncH yncO TSS_1825 TSS_1825

Gene      
Name: ydcD    Texpresso search in the literature
Synonym(s): ECK1451, EG11760, b1457
Genome position(nucleotides): 1529922 --> 1530404
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 27.33
External database links:  
ASAP:
 ABE-0004861
ECHOBASE:
 EB1710
ECOLIHUB:
 ydcD
ECOO157CYC:
 Z0274
OU-MICROARRAY:
 b1457
STRING:
 511145.b1457
COLOMBOS: ydcD


Product      
Name: uncharacterized protein YdcD
Synonym(s): YdcD
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 18.907
Isoelectric point: 8.96
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
Reference(s): [1] Paradis-Bleau C., et al., 2014
External database links:  
ALPHAFOLD:
 P31991
ECOCYC:
 EG11760-MONOMER
ECOLIWIKI:
 b1457
ECOO157CYC:
 Z0274-MONOMER
PRIDE:
 P31991
REFSEQ:
 NP_415974
UNIPROT:
 P31991


Operon      
Name: rhsE-ydcD         
Operon arrangement:
Transcription unit        Promoter
rhsE-ydcD


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1825 1530150 forward nd [RS-EPT-CBR] [2]
  promoter pptAp7 1532858 forward nd [COMP-AINF] [3]
  promoter pptAp6 1532867 forward nd [COMP-AINF] [3]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [COMP-AINF] Inferred computationally without human oversight


Reference(s)    

 [1] Paradis-Bleau C., Kritikos G., Orlova K., Typas A., Bernhardt TG., 2014, A genome-wide screen for bacterial envelope biogenesis mutants identifies a novel factor involved in cell wall precursor metabolism., PLoS Genet 10(1):e1004056

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [3] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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