RegulonDB RegulonDB 10.9: Gene Form
   

yneO gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yneO lsrK hipB IHF HipB HipAB HipB HipAB HipB HipAB HipB HipAB anti-terminator terminator hipBp hipBp

Gene      
Name: yneO    Texpresso search in the literature
Synonym(s): ECK1502, ECK1503, EG11780, b1509, b1510, b4696, orfT, ydeK, ydeU
Type: Pseudo Gene
Genome position(nucleotides): 1592665 <-- 1598086 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
50.41
External database links:  
ASAP:
ABE-0285161
ASAP:
ABE-0005037
ASAP:
ABE-0005035
ECHOBASE:
EB1728
ECHOBASE:
EB3564
ECOLIHUB:
ydeU
ECOLIHUB:
ydeK
ECOLIWIKI:
b1509
OU-MICROARRAY:
b1510
OU-MICROARRAY:
b1509
STRING:
316407.85674998
UNIPROT:
P77286
UNIPROT:
P32051
COLOMBOS: yneO


Product      
Name: AIDA-I family autotransporter YneO
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 7.029
Motif(s):
 
Type Positions Sequence
884 -> 884 N
1317 -> 1317 M
19 -> 1325 CSELTRRAGKTSTVNLRKSSGLTTKFSRLTLGVLLALSGSASGASLEVDNDQITNIDTDVAYDAYLVGWYGTGVLNILAGGNASLTTITTSVIGANEDSEGTVNVLGGTWRLYDSGNNARPLNVGQSGTGTLNIKQKGHVDGGYLRLGSSTGGVGTVNVEGEDSVLTTELFEIGSYGTGSLNITDKGYVTSSIVAILGYQAGSNGQVVVEKGGEWLIKNNDSSIEFQIGNQGTGEATIREGGLVTAENTIIGGNATGIGTLNVQDQDSVITVRRLYNGYFGNGTVNISNNGLINNKEYSLVGVQDGSHGVVNVTDKGHWNFLGTGEAFRYIYIGDAGDGELNVSSEGKVDSGIITAGMKETGTGNITVKDKNSVITNLGTNLGYDGHGEMNISNQGLVVSNGGSSLGYGETGVGNVSITTGGMWEVNKNVYTTIGVAGVGNLNISDGGKFVSQNITFLGDKASGIGTLNLMDATSSFDTVGINVGNFGSGIVNVSNGATLNSTGYGFIGGNASGKGIVNISTDSLWNLKTSSTNAQLLQVGVLGTGELNITTGGIVKARDTQIALNDKSKGDVRVDGQNSLLETFNMYVGTSGTGTLTLTNNGTLNVEGGEVYLGVFEPAVGTLNIGAAHGEAAADAGFITNATKVEFGLGEGVFVFNHTNNSDAGYQVDMLITGDDKDGKVIHDAGHTVFNAGNTYSGKTLVNDGLLTIASHTADGVTGMGSSEVTIANPGTLDILASTNSAGDYTLTNALKGDGLMRVQLSSSDKMFGFTHATGTEFAGVAQLKDSTFTLERDNTAALTHAMLQSDSENTTSVKVGEQSIGGLAMNGGTIIFDTDIPAATLAEGYISVDTLVVGAGDYTWKGRNYQVNGTGDVLIDVPKPWNDPMANNPLTTLNLLEHDDSHVGVQLVKAQTVIGSGGSLTLRDLQGDEVEADKTLHIAQNGTVVAEGDYGFRLTTAPGNGLYVNYGLKALNIHGGQKLTLAEHGGAYGATADMSAKIGGEGDLAINTVRQVSLSNGQNDYQGATYVQMGTLRTDADGALGNTRELNISNAAIVDLNGSTQTVETFTGQMGSTVLFKEGALTVNKGGISQGELTGGGNLNVTGGTLAIEGLNARYNALTSISPNAEVSLDNTQGLGRGNIANDGLLTLKNVTGELRNSISGKGIVSATARTDVELDGDNSRFVGQFNIDTGSALSVNEQKNLGDASVINNGLLTISTERSWAMTHSISGSGDVTKLGTGILTLNNDSAAYQGTTDIVGGEIAFGSDSAINMASQHINIHNSGVMSGNVTTAGDMNVMPGGGTACR
1 -> 18 MNRIYRVIWNCTLQVFQA

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0019867 - outer membrane
GO:0016020 - membrane
GO:0005886 - plasma membrane
Note(s): Note(s): ...[more].
Reference(s): [1] Gonnet P., et al., 2004
[2] Roux A., et al., 2005
[3] Yen MR., et al., 2002
External database links:  
ECOCYC:
EG11780-MONOMER
ECOLIWIKI:
b1510
INTERPRO:
IPR013425
INTERPRO:
IPR030895
INTERPRO:
IPR024973
INTERPRO:
IPR011050
PFAM:
PF13018
PRIDE:
P32051
PROSITE:
PS51257
REFSEQ:
NP_416027
SMR:
P32051
UNIPROT:
P32051


Operon      
Name: yneO         
Operon arrangement:
Transcription unit        Promoter
yneO


RNA cis-regulatory element    
Attenuation: Transcriptional


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Gonnet P., Rudd KE., Lisacek F., 2004, Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12., Proteomics 4(6):1597-613

 [2] Roux A., Beloin C., Ghigo JM., 2005, Combined inactivation and expression strategy to study gene function under physiological conditions: application to identification of new Escherichia coli adhesins., J Bacteriol 187(3):1001-13

 [3] Yen MR., Peabody CR., Partovi SM., Zhai Y., Tseng YH., Saier MH., 2002, Protein-translocating outer membrane porins of Gram-negative bacteria., Biochim Biophys Acta 1562(1-2):6-31


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