RegulonDB RegulonDB 10.9: Gene Form
   

kdgT gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

kdgT yiiM sodA RhaS terminator anti-terminator anti-anti-terminator yiiMp4 yiiMp4 yiiMp5 yiiMp5

Gene      
Name: kdgT    Texpresso search in the literature
Synonym(s): ECK3902, EG11869, b3909
Genome position(nucleotides): 4101690 --> 4102673 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
52.74
External database links:  
ASAP:
ABE-0012764
CGSC:
589
ECHOBASE:
EB1815
ECOLIHUB:
kdgT
OU-MICROARRAY:
b3909
STRING:
511145.b3909
COLOMBOS: kdgT


Product      
Name: 2-dehydro-3-deoxy-D-gluconate:H+ symporter
Synonym(s): KdgT
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 33.669
Isoelectric point: 9.502
Motif(s):
 
Type Positions Sequence
73 -> 93 KSGTLVVTKIAVAWVVAAIAS
163 -> 183 IASFEPHVFVGAVLPFLVGFA
139 -> 159 AGAFVLMSLESGPLMTMIILG
95 -> 115 IIPEHGVEVGFFAGLSTLALV
42 -> 62 GMITGTVPILAVWFFCMGASI

 

Classification:
Multifun Terms (GenProtEC)  
  1 - metabolism --> 1.1 - carbon utilization --> 1.1.1 - carbon compounds
  4 - transport --> 4.2 - Electrochemical potential driven transporters --> 4.2.A - Porters (Uni-, Sym- and Antiporters)
  6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0015293 - symporter activity
GO:0005351 - carbohydrate:proton symporter activity
GO:0015649 - 2-keto-3-deoxygluconate:proton symporter activity
biological_process GO:0008643 - carbohydrate transport
GO:0035429 - gluconate transmembrane transport
GO:0046411 - 2-keto-3-deoxygluconate transmembrane transport
GO:1902600 - proton transmembrane transport
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
KDGT-MONOMER
ECOLIWIKI:
b3909
INTERPRO:
IPR018395
INTERPRO:
IPR004684
PFAM:
PF03812
PRIDE:
P0A712
PRODB:
PRO_000023049
REFSEQ:
NP_418345
UNIPROT:
P0A712


Operon      
Name: kdgT         
Operon arrangement:
Transcription unit        Promoter
kdgT


RNA cis-regulatory element    
Attenuation: Transcriptional


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yiiMp5 4102753 forward Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter yiiMp4 4102784 forward Similarity to the consensus
Read more >
[ICWHO] [1]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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