RegulonDB RegulonDB 11.0: Gene Form
   

yjbI gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yjbI malM ubiC FNR IHF TSS_4876 TSS_4876 ubiCp ubiCp

Gene      
Name: yjbI    Texpresso search in the literature
Synonym(s): ECK4030, EG11927, b4038
Type: Pseudo Gene
Genome position(nucleotides): 4250703 --> 4252283
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
32.57
External database links:  
ASAP:
ABE-0013224
ECHOBASE:
EB1871
ECOLIHUB:
yjbI
OU-MICROARRAY:
b4038
STRING:
316407.85676790
UNIPROT:
P32690
COLOMBOS: yjbI


Product      
Name: pentapeptide repeats-containing protein YjbI
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 6.351
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
P32690
ECOCYC:
EG11927-MONOMER
ECOLIWIKI:
b4038
INTERPRO:
IPR001646
INTERPRO:
IPR025726
PFAM:
PF13599
PFAM:
PF13981
PRIDE:
P32690
REFSEQ:
NP_418462
SMR:
P32690
UNIPROT:
P32690


Operon      
Name: yjbI         
Operon arrangement:
Transcription unit        Promoter
yjbI


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_4876 4252748 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


RegulonDB