RegulonDB RegulonDB 11.1: Gene Form
   

yjcB gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

pdeC ssb yjcB SoxR yjcCp yjcCp TSS_4898 (cluster) TSS_4898 (cluster) yjcBp yjcBp

Gene      
Name: yjcB    Texpresso search in the literature
Synonym(s): ECK4052, EG11937, b4060
Genome position(nucleotides): 4274760 <-- 4275041
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 52.48
External database links:  
ASAP:
 ABE-0013300
ECHOBASE:
 EB1881
ECOLIHUB:
 yjcB
OU-MICROARRAY:
 b4060
STRING:
 511145.b4060
COLOMBOS: yjcB


Product      
Name: uncharacterized protein YjcB
Synonym(s): YjcB
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 10.303
Isoelectric point: 5.652
Motif(s):
 
Type Positions Sequence Comment
1 -> 90 MATLTTGVVLLRWQLLSAVMMFLASTLNIRFRRSDYVGLAVISSGLGVVSACWFAMGLLGITMADITAIWHNIESVMIEEMNQTPPQWPM

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005886 - plasma membrane
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P32700
ECOCYC:
 EG11937-MONOMER
ECOLIWIKI:
 b4060
INTERPRO:
 IPR016958
PFAM:
 PF15940
PRIDE:
 P32700
REFSEQ:
 NP_418484
SMR:
 P32700
UNIPROT:
 P32700


Operon      
Name: yjcB         
Operon arrangement:
Transcription unit        Promoter
yjcB


Transcriptional Regulation      
Display Regulation             
Activated by: SoxR


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_4898 (cluster) 4275402 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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