RegulonDB RegulonDB 10.10: Gene Form
   

xylH gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

xylG xylH xylR xylF terminator anti-terminator xylRp xylRp

Gene      
Name: xylH    Texpresso search in the literature
Synonym(s): ECK3557, EG12276, b3568
Genome position(nucleotides): 3733720 --> 3734901 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 53.89
External database links:  
ASAP:
 ABE-0011650
CGSC:
 33783
ECHOBASE:
 EB2185
ECOLIHUB:
 xylH
OU-MICROARRAY:
 b3568
STRING:
 511145.b3568
COLOMBOS: xylH


Product      
Name: xylose ABC transporter membrane subunit
Synonym(s): XylH
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 41.031
Isoelectric point: 10.818
Motif(s):
 
Type Positions Sequence
25 -> 45 LNLQVFVMIAAIIAIMLFFTW
57 -> 382 VSNLLRQTAITGILAVGMVFVIISAEIDLSVGSMMGLLGGVAAICDVWLGWPLPLTIIVTLVLGLLLGAWNGWWVAYRKVPSFIVTLAGMLAFRGILIGITNGTTVSPTSAAMSQIGQSYLPASTGFIIGALGLMAFVGWQWRGRMRRQALGLQSPASTAVVGRQALTAIIVLGAIWLLNDYRGVPTPVLLLTLLLLGGMFMATRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIAGLILSSRLGAGSPSAGNIAELDAIAACVIGGTSLAGGVGSVAGAVMGAFIMASLDNGMSMMDVPTFWQYIVKGAILLLA
136 -> 156 VPSFIVTLAGMLAFRGILIGI
240 -> 260 GVPTPVLLLTLLLLGGMFMAT
288 -> 308 TKLAVFAINGLMVAIAGLILS

 
Classification:
Multifun Terms (GenProtEC)  
  1 - metabolism --> 1.1 - carbon utilization --> 1.1.1 - carbon compounds
  6 - cell structure --> 6.1 - membrane
  4 - transport --> 4.3 - Primary Active Transporters --> 4.3.A - Pyrophosphate Bond (ATP; GTP; P2) Hydrolysis-driven Active Transporters --> 4.3.A.1 - The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases --> 4.3.A.1.m - ABC superfamily, membrane component
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0005887 - integral component of plasma membrane
GO:0016021 - integral component of membrane
GO:0043190 - ATP-binding cassette (ABC) transporter complex
molecular_function GO:0022857 - transmembrane transporter activity
biological_process GO:0008643 - carbohydrate transport
GO:0042732 - D-xylose metabolic process
GO:0015752 - D-ribose transmembrane transport
GO:0055085 - transmembrane transport
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
 XYLH-MONOMER
ECOLIWIKI:
 b3568
INTERPRO:
 IPR001851
PFAM:
 PF02653
PRIDE:
 P0AGI4
PRODB:
 PRO_000024244
REFSEQ:
 NP_418025
UNIPROT:
 P0AGI4


Operon      
Name: xylFGHR         
Operon arrangement:
Transcription unit        Promoter
xylFGHR
xylR


Transcriptional Regulation      
Display Regulation             
Activated by: CRP, XylR
Repressed by: Fis


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References



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