RegulonDB RegulonDB 10.9: Gene Form
   

yiaT gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yiaU yiaT sgbE ysaD ysaC sgbU yiaV anti-terminator terminator yiaUp8 yiaUp8 yiaUp9 yiaUp9 yiaTp3 yiaTp3 yiaTp6 yiaTp6 yiaTp8 yiaTp8 yiaUp11 yiaUp11 yiaTp4 yiaTp4

Gene      
Name: yiaT    Texpresso search in the literature
Synonym(s): ECK3573, EG12288, b3584
Genome position(nucleotides): 3751128 <-- 3751868 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
48.72
External database links:  
ASAP:
ABE-0011704
ECHOBASE:
EB2196
ECOLIHUB:
yiaT
OU-MICROARRAY:
b3584
STRING:
511145.b3584
COLOMBOS: yiaT


Product      
Name: outer membrane protein YiaT
Synonym(s): YiaT
Sequence: Get amino acid sequence Fasta Format
Cellular location: outer membrane
Molecular weight: 27.414
Isoelectric point: 4.279
Motif(s):
 
Type Positions Sequence
1 -> 21 MLINRNIVALFALPFMASATA
26 -> 246 IGAGAAYNESPYRGYNENTKAIPLISYEGDTFYVRQTTLGFILSQSEKNELSLTASWMPLEFDPTDNDDYAMQQLDKRDSTAMAGVAWYHHERWGTVKASAAADVLDNSNGWVGELSVFHKMQIGRLSLTPALGVLYYDENFSDYYYGISESESRRSGLASYSAQDAWVPYVSLTAKYPIGEHVVLMASAGYSELPEEITDSPMIDRNESFTFVTGVSWRF
22 -> 246 SELSIGAGAAYNESPYRGYNENTKAIPLISYEGDTFYVRQTTLGFILSQSEKNELSLTASWMPLEFDPTDNDDYAMQQLDKRDSTAMAGVAWYHHERWGTVKASAAADVLDNSNGWVGELSVFHKMQIGRLSLTPALGVLYYDENFSDYYYGISESESRRSGLASYSAQDAWVPYVSLTAKYPIGEHVVLMASAGYSELPEEITDSPMIDRNESFTFVTGVSWRF
53 -> 61 EGDTFYVRQ
218 -> 235 SELPEEITDSPMIDRNES

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0009279 - cell outer membrane
GO:0016020 - membrane
molecular_function GO:0030674 - protein-macromolecule adaptor activity
biological_process GO:0009252 - peptidoglycan biosynthetic process
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
EG12288-MONOMER
ECOLIWIKI:
b3584
INTERPRO:
IPR010583
PANTHER:
PTHR38776
PFAM:
PF06629
PRIDE:
P37681
REFSEQ:
NP_418041
UNIPROT:
P37681


Operon      
Name: yiaT         
Operon arrangement:
Transcription unit        Promoter
yiaT


RNA cis-regulatory element    
Attenuation: Transcriptional


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yiaTp4 3751875 reverse Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter yiaUp11 3751896 forward Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter yiaTp8 3751905 reverse Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter yiaTp6 3751960 reverse Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter yiaTp3 3751962 reverse Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter yiaUp9 3751975 forward Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter yiaUp8 3751986 forward Similarity to the consensus
Read more >
[ICWHO] [1]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


RegulonDB