RegulonDB RegulonDB 10.9: Gene Form
   

yjeM gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yjeM epmA yjeN yjeO terminator anti-terminator anti-anti-terminator TSS_4998 TSS_4998

Gene      
Name: yjeM    Texpresso search in the literature
Synonym(s): ECK4152, EG12475, b4156
Genome position(nucleotides): 4383839 --> 4385341 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
47.11
External database links:  
ASAP:
ABE-0013613
ECHOBASE:
EB2368
ECOLIHUB:
yjeM
OU-MICROARRAY:
b4156
STRING:
511145.b4156
COLOMBOS: yjeM


Product      
Name: putative transporter YjeM
Synonym(s): YjeM
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 54.725
Isoelectric point: 9.282
Motif(s):
 
Type Positions Sequence
38 -> 58 AIPFYIFSALLFFIPFALMMA
370 -> 390 GLVTVFILLVSFGGGTASAFF
463 -> 483 WDSTLWMIGGPVFFSLLAMAI
395 -> 415 LMANVSMTLPYLFLALAFPFF
8 -> 28 MSLIGLILMIFTSVFGFANSP

 

Classification:
Multifun Terms (GenProtEC)  
  4 - transport --> 4.2 - Electrochemical potential driven transporters --> 4.2.A - Porters (Uni-, Sym- and Antiporters)
  6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0015171 - amino acid transmembrane transporter activity
GO:0022857 - transmembrane transporter activity
biological_process GO:0006865 - amino acid transport
GO:0055085 - transmembrane transport
GO:0003333 - amino acid transmembrane transport
Note(s): Note(s): ...[more].
Reference(s): [1] Jindal S., et al., 2019
External database links:  
ECOCYC:
YJEM-MONOMER
ECOLIWIKI:
b4156
INTERPRO:
IPR002293
PFAM:
PF13520
PRIDE:
P39282
REFSEQ:
NP_418580
UNIPROT:
P39282


Operon      
Name: yjeM         
Operon arrangement:
Transcription unit        Promoter
yjeM


RNA cis-regulatory element    
Attenuation: Transcriptional


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_4998 4383369 forward nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Jindal S., Yang L., Day PJ., Kell DB., 2019, Involvement of multiple influx and efflux transporters in the accumulation of cationic fluorescent dyes by Escherichia coli., BMC Microbiol 19(1):195

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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