RegulonDB RegulonDB 10.9: Gene Form
   

yjhF gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yjhG yjhF yjhU TSS_5127 TSS_5127 TSS_5126 TSS_5126 yjhUp8 yjhUp8 TSS_5125 TSS_5125 yjhUp9 yjhUp9 yjhUp1 yjhUp1

Gene      
Name: yjhF    Texpresso search in the literature
Synonym(s): ECK4285, EG12548, b4296
Genome position(nucleotides): 4520671 <-- 4522020 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
49.04
External database links:  
ASAP:
ABE-0014084
ECHOBASE:
EB2436
ECOLIHUB:
yjhF
OU-MICROARRAY:
b4296
STRING:
511145.b4296
COLOMBOS: yjhF


Product      
Name: KpLE2 phage-like element; putative transporter YjhF
Synonym(s): YjhF
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 47.004
Isoelectric point: 8.39
Motif(s):
 
Type Positions Sequence
52 -> 72 SGLGGTLGHIGLIFGFGVMLG
302 -> 322 CGKAIAGIAGLLLIIGGGGAF
429 -> 449 LMSTLLSISGLIFILLASLVL
24 -> 44 TFVSLIIVSIAVAIASGMDLS
106 -> 126 FIVGIALFFEVGLILLVPILF

 

Classification:
Multifun Terms (GenProtEC)  
  4 - transport --> 4.2 - Electrochemical potential driven transporters --> 4.2.A - Porters (Uni-, Sym- and Antiporters)
  6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0005887 - integral component of plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0015128 - gluconate transmembrane transporter activity
biological_process GO:0035429 - gluconate transmembrane transport
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
YJHF-MONOMER
ECOLIWIKI:
b4296
INTERPRO:
IPR003474
PANTHER:
PTHR30354
PFAM:
PF02447
PRIDE:
P39357
REFSEQ:
NP_418716
UNIPROT:
P39357


Operon      
Name: yjhF         
Operon arrangement:
Transcription unit        Promoter
yjhF


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yjhUp1 4520381 reverse Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter yjhUp9 4520401 reverse Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter TSS_5125 4520414 reverse nd [RS-EPT-CBR] [2]
  promoter yjhUp8 4520540 reverse Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter TSS_5126 4520663 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_5127 4521212 reverse nd [RS-EPT-CBR] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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