RegulonDB RegulonDB 10.10: Gene Form
   

ygjI gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ygjI ygjJ ebgC ebgA ygjIp1 ygjIp1 ygjIp2 ygjIp2

Gene      
Name: ygjI    Texpresso search in the literature
Synonym(s): ECK3068, EG12720, b3078
Genome position(nucleotides): 3226234 --> 3227667 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 49.65
External database links:  
ASAP:
 ABE-0010110
ECHOBASE:
 EB2579
ECOLIHUB:
 ygjI
OU-MICROARRAY:
 b3078
STRING:
 511145.b3078
COLOMBOS: ygjI


Product      
Name: putative transporter YgjI
Synonym(s): YgjI
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 52.147
Isoelectric point: 9.502
Motif(s):
 
Type Positions Sequence
233 -> 253 IILAGIFIGVLYSVSSVLINV
9 -> 29 IGKFGLLSLTFAAVYSFNNVI
42 -> 62 MFFLATIFYFIPFCLIIAEFV
264 -> 284 GGSVQVFHGMAAYFGLPEALM
159 -> 179 LMLLLTLSYILLAGTALVGGV

 
Classification:
Multifun Terms (GenProtEC)  
  4 - transport --> 4.2 - Electrochemical potential driven transporters --> 4.2.A - Porters (Uni-, Sym- and Antiporters)
  6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0015171 - amino acid transmembrane transporter activity
GO:0022857 - transmembrane transporter activity
biological_process GO:0006865 - amino acid transport
GO:0055085 - transmembrane transport
GO:0003333 - amino acid transmembrane transport
Note(s): Note(s): ...[more].
Evidence: [AIFS] Automated inference of function from sequence
Reference(s): [1] Jindal S., et al., 2019
[2] Riley M., et al., 2006
External database links:  
DIP:
 DIP-12235N
ECOCYC:
 YGJI-MONOMER
ECOLIWIKI:
 b3078
INTERPRO:
 IPR002293
PFAM:
 PF13520
PRIDE:
 P42590
REFSEQ:
 YP_026200
UNIPROT:
 P42590


Operon      
Name: ygjI         
Operon arrangement:
Transcription unit        Promoter
ygjI


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter ygjIp2 3226070 forward nd [ICWHO] [3]
  promoter ygjIp1 3226142 forward nd [ICWHO] [3]


Evidence    

 [ICWHO] Inferred computationally without human oversight


Reference(s)    

 [1] Jindal S., Yang L., Day PJ., Kell DB., 2019, Involvement of multiple influx and efflux transporters in the accumulation of cationic fluorescent dyes by Escherichia coli., BMC Microbiol 19(1):195

 [2] Riley M., Abe T., Arnaud MB., Berlyn MK., Blattner FR., Chaudhuri RR., Glasner JD., Horiuchi T., Keseler IM., Kosuge T., Mori H., Perna NT., Plunkett G., Rudd KE., Serres MH., Thomas GH., Thomson NR., Wishart D., Wanner BL., 2006, Escherichia coli K-12: a cooperatively developed annotation snapshot--2005., Nucleic Acids Res 34(1):1-9

 [3] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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