RegulonDB RegulonDB 11.1: Gene Form
   

garP gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

garD garP garL Fur garPp garPp garRp garRp

Gene      
Name: garP    Texpresso search in the literature
Synonym(s): ECK3115, EG12760, b3127, yhaU
Genome position(nucleotides): 3273573 <-- 3274907
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 51.31
External database links:  
ASAP:
 ABE-0010279
ECHOBASE:
 EB2613
ECOLIHUB:
 garP
OU-MICROARRAY:
 b3127
STRING:
 511145.b3127
COLOMBOS: garP


Product      
Name: galactarate/D-glucarate transporter GarP
Synonym(s): GarP, YhaU
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 49.009
Isoelectric point: 9.341
Motif(s):
 
Type Positions Sequence Comment
12 -> 32 GVHTRYLILLIIFIVTAVNYA UniProt: Helical.
23 -> 365 IFIVTAVNYADRATLSIAGTEVAKELQLSAVSMGYIFSAFGWAYLLMQIPGGWLLDKFGSKKVYTYSLFFWSLFTFLQGFVDMFPLAWAGISMFFMRFMLGFSEAPSFPANARIVAAWFPTKERGTASAIFNSAQYFSLALFSPLLGWLTFAWGWEHVFTVMGVIGFVLTALWIKLIHNPTDHPRMSAEELKFISENGAVVDMDHKKPGSAAASGPKLHYIKQLLSNRMMLGVFFGQYFINTITWFFLTWFPIYLVQEKGMSILKVGLVASIPALCGFAGGVLGGVFSDYLIKRGLSLTLARKLPIVLGMLLASTIILCNYTNNTTLVVMLMALAFFGKGFGA
57 -> 77 YIFSAFGWAYLLMQIPGGWLL UniProt: Helical.
90 -> 110 LFFWSLFTFLQGFVDMFPLAW UniProt: Helical.
111 -> 131 AGISMFFMRFMLGFSEAPSFP UniProt: Helical.

 
Classification:
Multifun Terms (GenProtEC)  
  1 - metabolism --> 1.1 - carbon utilization --> 1.1.1 - carbon compounds
  4 - transport --> 4.2 - Electrochemical potential driven transporters --> 4.2.A - Porters (Uni-, Sym- and Antiporters)
  6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0005887 - integral component of plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0022857 - transmembrane transporter activity
GO:0015296 - anion:cation symporter activity
biological_process GO:0015698 - inorganic anion transport
GO:0019580 - galactarate metabolic process
GO:0042836 - D-glucarate metabolic process
GO:0055085 - transmembrane transport
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P0AA80
ECOCYC:
 YHAU-MONOMER
ECOLIWIKI:
 b3127
INTERPRO:
 IPR000849
INTERPRO:
 IPR020846
INTERPRO:
 IPR011701
INTERPRO:
 IPR036259
MODBASE:
 P0AA80
PFAM:
 PF07690
PRIDE:
 P0AA80
PROSITE:
 PS50850
REFSEQ:
 NP_417596
SMR:
 P0AA80
UNIPROT:
 P0AA80


Operon      
Name: garPLRK-rnpB         
Operon arrangement:
Transcription unit        Promoter
rnpB
garR
garPLRK-rnpB


Transcriptional Regulation      
Display Regulation             
Activated by: FNR, CdaR
Repressed by: H-NS, Fur


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References



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