RegulonDB RegulonDB 11.1: Gene Form
   

yhdW gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yhdX yhdW yhdV NtrC NtrC yhdWp yhdWp

Gene      
Name: yhdW    Texpresso search in the literature
Synonym(s): ECK3255, EG12834, b3268
Type: Pseudo Gene
Genome position(nucleotides): 3419042 --> 3420066
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 49.76
External database links:  
ASAP:
 ABE-0010731
ECHOBASE:
 EB2683
ECOLIHUB:
 yhdW
OU-MICROARRAY:
 b3268
STRING:
 316407.85676059
UNIPROT:
 P45766
COLOMBOS: yhdW


Product      
Name: putative ABC transporter periplasmic binding protein YhdW
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 12.574
Motif(s):
 
Type Positions Sequence Comment
1 -> 19 MKKMMIATLAAASVLLAVA

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0042597 - periplasmic space
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing
biological_process GO:0006865 - amino acid transport
GO:0015833 - peptide transport
Note(s): Note(s): ...[more].
Reference(s): [1] Jindal S., et al., 2019
External database links:  
ECOCYC:
 YHDW-MONOMER
ECOLIWIKI:
 b3268
INTERPRO:
 IPR001638
INTERPRO:
 IPR018313
MODBASE:
 P45766
PFAM:
 PF00497
PRIDE:
 P45766
PROSITE:
 PS01039
REFSEQ:
 NP_417734
SMART:
 SM00062
SMR:
 P45766
UNIPROT:
 P45766


Operon      
Name: yhdWXYZ         
Operon arrangement:
Transcription unit        Promoter
yhdWXYZ


Transcriptional Regulation      
Display Regulation             
Activated by: NtrC


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Jindal S., Yang L., Day PJ., Kell DB., 2019, Involvement of multiple influx and efflux transporters in the accumulation of cationic fluorescent dyes by Escherichia coli., BMC Microbiol 19(1):195

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