RegulonDB RegulonDB 10.9: Gene Form
   

proK gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

eptB dppA proK Fis FNR MgrR GcvB Cis-reg proKp proKp dppAp dppAp TSS_4155 TSS_4155 TSS_4154 (cluster) TSS_4154 (cluster) TSS_4153 TSS_4153 TSS_4152 TSS_4152 TSS_4151 TSS_4151 TSS_4150 (cluster) TSS_4150 (cluster) TSS_4149 TSS_4149 TSS_4148 TSS_4148 TSS_4147 TSS_4147

Gene      
Name: proK    Texpresso search in the literature
Synonym(s): ECK3532, EG30066, b3545, proV
Genome position(nucleotides): 3708616 <-- 3708692 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
61.04
External database links:  
ASAP:
ABE-0011579
CGSC:
17632
ECHOBASE:
EB4229
ECOLIHUB:
proK
OU-MICROARRAY:
b3545
COLOMBOS: proK


Product      
Name: tRNA-Pro(CGG)
Synonym(s): tRNAproK
Type: tRNAs
Cellular location: cytosol
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related --> 2.2.5 - tRNA
Gene Ontology Terms (GO)  
cellular_component GO:0005737 - cytoplasm
GO:0005829 - cytosol
molecular_function GO:0030533 - triplet codon-amino acid adaptor activity
Note(s): Note(s): ...[more].
Evidence: [TAS] Traceable author statement
Reference(s): [1] Siekevitz P., et al., 1981
External database links:  
ECOCYC:
proK-tRNA
ECOLIWIKI:
b3545


Operon      
Name: proK         
Operon arrangement:
Transcription unit        Promoter
proK


Transcriptional Regulation      
Display Regulation             
Activated by: Fis


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_4147 3706267 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_4148 3706923 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_4149 3706927 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_4150 (cluster) 3707044 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [2]
  promoter TSS_4151 3707053 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_4152 3707203 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_4153 3707508 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_4154 (cluster) 3707699 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [2]
  promoter TSS_4155 3707727 reverse nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Siekevitz P., Zamecnik PC., 1981, Ribosomes and protein synthesis., J Cell Biol 91(3 Pt 2):53s-65s

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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