RegulonDB RegulonDB 11.2: Gene Form
   

serT gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

hyaA yccA serT hyaB NarL NarP NarL ArcA NarP Fis IscR IscR YdeO ArcA Fis CpxR anti-anti-terminator anti-terminator terminator hyaAp2 hyaAp2 hyaAp hyaAp serTp serTp TSS_1307 TSS_1307 TSS_1306 TSS_1306 TSS_1305 (cluster) TSS_1305 (cluster) yccAp yccAp TSS_1304 (cluster) TSS_1304 (cluster) TSS_1303 TSS_1303 TSS_1302 TSS_1302 TSS_1301 (cluster) TSS_1301 (cluster) TSS_1300 TSS_1300 TSS_1299 TSS_1299 TSS_1298 TSS_1298 TSS_1297 TSS_1297 TSS_1296 TSS_1296 TSS_1295 (cluster) TSS_1295 (cluster)

Gene      
Name: serT    Texpresso search in the literature
Synonym(s): ECK0962, EG30093, b0971, divE
Genome position(nucleotides): 1031625 <-- 1031712
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 60.23
External database links:  
ASAP:
 ABE-0003283
CGSC:
 168
ECHOBASE:
 EB4256
ECOLIHUB:
 serT
OU-MICROARRAY:
 b0971
COLOMBOS: serT


Product      
Name: tRNA-Ser(UGA)
Synonym(s): tRNASer1, tRNAserT
Type: tRNAs
Cellular location: cytosol
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related --> 2.2.5 - tRNA
Gene Ontology Terms (GO)  
cellular_component GO:0005737 - cytoplasm
GO:0005829 - cytosol
molecular_function GO:0030533 - triplet codon-amino acid adaptor activity
Note(s): Note(s): ...[more].
Evidence: [AS-TAS] Traceable author statement
Reference(s): [1] Siekevitz P., et al., 1981
External database links:  
ECOCYC:
 serT-tRNA
ECOLIWIKI:
 b0971


Operon      
Name: serT         
Operon arrangement:
Transcription unit        Promoter
serT


Transcriptional Regulation      
Display Regulation             
Activated by: Fis


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1295 (cluster) 1030888 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_1296 1030891 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_1297 1031154 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_1298 1031167 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_1299 1031229 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_1300 1031236 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_1301 (cluster) 1031262 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_1302 1031273 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_1303 1031275 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_1304 (cluster) 1031345 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_1305 (cluster) 1031450 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_1306 1031454 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_1307 1031546 reverse nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Siekevitz P., Zamecnik PC., 1981, Ribosomes and protein synthesis., J Cell Biol 91(3 Pt 2):53s-65s

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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