RegulonDB RegulonDB 11.1: Gene Form
   

yncL gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

patD ortT yncL ydcXp9 ydcXp9 yncLp4 yncLp4 ydcXp7 ydcXp7 ydcXp1 ydcXp1 TSS_1817 (cluster) TSS_1817 (cluster) TSS_1816 TSS_1816

Gene      
Name: yncL    Texpresso search in the literature
Synonym(s): ECK4408, G0-8887, b4598
Genome position(nucleotides): 1517099 <-- 1517194
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 33.33
External database links:  
ECOLIHUB:
 yncL
STRING:
 511145.b4598
COLOMBOS: yncL


Product      
Name: uncharacterized protein YncL
Synonym(s): YncL
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 3.538
Isoelectric point: 12.501
Motif(s):
 
Type Positions Sequence Comment
7 -> 27 TVVLINFFAAVGLFTLISMRF

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0005887 - integral component of plasma membrane
GO:0016021 - integral component of membrane
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 A5A615
ECOCYC:
 MONOMER0-761
ECOLIWIKI:
 b4598
PRIDE:
 A5A615
REFSEQ:
 YP_001165318
UNIPROT:
 A5A615


Operon      
Name: yncL         
Operon arrangement:
Transcription unit        Promoter
yncL


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1816 1517209 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1817 (cluster) 1517218 reverse nd [RS-EPT-CBR] [1]
  promoter ydcXp1 1517221 forward nd [COMP-AINF] [2]
  promoter ydcXp7 1517236 forward nd [COMP-AINF] [2]
  promoter yncLp4 1517246 reverse nd [COMP-AINF] [2]
  promoter ydcXp9 1517354 forward nd [COMP-AINF] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [COMP-AINF] Inferred computationally without human oversight


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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