RegulonDB RegulonDB 10.10: Gene Form
   

C0719 gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

glcB glcA C0719 anti-anti-terminator anti-terminator terminator TSS_3299 TSS_3299 glcAp10 glcAp10 glcAp12 glcAp12

Gene      
Name: C0719    Texpresso search in the literature
Synonym(s): G0-8912
Type: Phantom Gene
Genome position(nucleotides): 3121358 --> 3121579 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
43.69
Note(s): C0719 is a candidate small RNA locus of approximately 221 nt in length Tjaden B,2002.
Review: 12654996
External database links:  
ECOLIHUB:
C0719
COLOMBOS: C0719


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter glcAp12 3121321 reverse nd [ICWHO] [1]
  promoter glcAp10 3121364 reverse nd [ICWHO] [1]
  promoter TSS_3299 3121581 reverse nd [RS-EPT-CBR] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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