RegulonDB RegulonDB 10.8: Gene Form
   

insA1 gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

insAB1 insB1 insA1 rpsT terminator anti-terminator anti-anti-terminator TSS_48 TSS_48 TSS_47 TSS_47 TSS_46 TSS_46 TSS_45 (cluster) TSS_45 (cluster) TSS_44 (cluster) TSS_44 (cluster)

Gene      
Name: insA1    Texpresso search in the literature
Synonym(s): ECK0023, G6086, b0022
Genome position(nucleotides): 20233 <-- 20508 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
52.9
External database links:  
ASAP:
ABE-0000078
OU-MICROARRAY:
b0022
PortEco:
insA-1
STRING:
511145.b3444
COLOMBOS: insA1


Product      
Name: IS1 protein InsA
Synonym(s): InsA1
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 9.868
Isoelectric point: 10.862
Motif(s):
 
Type Positions Sequence
1 -> 36 MASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCR
43 -> 88 FTYTASQPGTHQKIIDMAMNGVGCRATARIMGVGLNTILRHLKNSG

 

Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.3 - transposon related
Gene Ontology Terms (GO)  
biological_process GO:0006310 - DNA recombination
GO:0006313 - transposition, DNA-mediated
GO:0032196 - transposition
Note(s): Note(s): ...[more].
Evidence: [IMP] Inferred from mutant phenotype
Reference(s): [1] Escoubas JM., et al., 1994
External database links:  
ECOCYC:
G6086-MONOMER
ECOLIWIKI:
b0022
INTERPRO:
IPR024431
INTERPRO:
IPR003220
PFAM:
PF03811
PFAM:
PF12759
PRIDE:
P0CF07
REFSEQ:
NP_414563
SMR:
P0CF07
UNIPROT:
P0CF07


Operon      
Name: insAB1A1B1         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_44 (cluster) 20342 forward For this promoter, there
Read more >
[RS-EPT-CBR] [2]
  promoter TSS_45 (cluster) 20678 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [2]
  promoter TSS_46 20910 reverse nd [RS-EPT-CBR] [2]
  transcriptional_attenuator anti-anti-terminator 20912 20935 forward nd nd nd
  transcriptional_attenuator anti-terminator 20912 20955 forward nd nd nd
  transcriptional_attenuator terminator 20937 20982 forward nd nd nd
  promoter TSS_47 21020 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_48 21045 reverse nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Escoubas JM., Lane D., Chandler M., 1994, Is the IS1 transposase, InsAB', the only IS1-encoded protein required for efficient transposition?, J Bacteriol 176(18):5864-7

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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