RegulonDB RegulonDB 11.1: Gene Form
   

ykfG gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ykfG yafX ykfH

Gene      
Name: ykfG    Texpresso search in the literature
Synonym(s): ECK0249, G6122, b0247
Genome position(nucleotides): 264256 <-- 264732
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 58.49
External database links:  
ASAP:
 ABE-0000841
ECHOBASE:
 EB4077
ECOLIHUB:
 ykfG
ECOO157CYC:
 Z1657
OU-MICROARRAY:
 b0247
STRING:
 511145.b0247
COLOMBOS: ykfG


Product      
Name: CP4-6 prophage; RadC-like JAB domain-containing protein YkfG
Synonym(s): YkfG
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 18.099
Isoelectric point: 9.121
Motif(s):
 
Type Positions Sequence Comment
36 -> 158 AFTSTHAVREWLRLHMAALEREEFRVLYLDNQNQLIAHETLFTGTINRTEVHPREVVKRALHFNAAAVILAHNHPSGETTPSQADKTLTQRLVQVLQLVDIRVPDHLIVGGRQIYSFAEHGLL UniProt: MPN.
38 -> 157 TSTHAVREWLRLHMAALEREEFRVLYLDNQNQLIAHETLFTGTINRTEVHPREVVKRALHFNAAAVILAHNHPSGETTPSQADKTLTQRLVQVLQLVDIRVPDHLIVGGRQIYSFAEHGL
107 -> 120 HNHPSGETTPSQAD UniProt: JAMM motif; Sequence Annotation Type: short sequence motif.

 
Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0008233 - peptidase activity
GO:0016787 - hydrolase activity
GO:0046872 - metal ion binding
GO:0008237 - metallopeptidase activity
biological_process GO:0006508 - proteolysis
GO:0006974 - cellular response to DNA damage stimulus
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 Q47685
ECOCYC:
 G6122-MONOMER
ECOLIWIKI:
 b0247
ECOO157CYC:
 Z1657-MONOMER
INTERPRO:
 IPR025657
INTERPRO:
 IPR037518
INTERPRO:
 IPR020891
INTERPRO:
 IPR001405
PANTHER:
 PTHR30471
PFAM:
 PF04002
PRIDE:
 Q47685
PROSITE:
 PS01302
PROSITE:
 PS50249
REFSEQ:
 NP_414781
SMR:
 Q47685
UNIPROT:
 Q47685


Operon      
Name: yafY-ykfBF-yafX-ykfGH-yafW-ykfI         
Operon arrangement:
Transcription unit        Promoter
ykfBF-yafX-ykfGH-yafW-ykfI
ykfBF-yafX-ykfGH-yafW-ykfI
ykfGH-yafW-ykfI
yafY-ykfBF-yafX-ykfGH-yafW-ykfI


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References



RegulonDB