RegulonDB RegulonDB 11.1: Gene Form
   

insA3 gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yagJ insAB3 insB3 insA3 terminator TSS_472 TSS_472

Gene      
Name: insA3    Texpresso search in the literature
Synonym(s): ECK0023, G6146, b0275
Genome position(nucleotides): 291071 <-- 291346
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 53.26
External database links:  
ASAP:
 ABE-0000951
ECOLIHUB:
 insA-3
OU-MICROARRAY:
 b0275
STRING:
 511145.b4516
COLOMBOS: insA3


Product      
Name: IS1 protein InsA
Synonym(s): InsA3
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 9.902
Isoelectric point: 10.862
Motif(s):
 
Type Positions Sequence Comment
1 -> 36 MASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCR
43 -> 88 FTYTASQPGTHQKIIDMAMNGVGCRATARIMGVGLNTIFRHLKNSG

 
Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.3 - transposon related
Gene Ontology Terms (GO)  
biological_process GO:0006310 - DNA recombination
GO:0006313 - transposition, DNA-mediated
GO:0032196 - transposition
External database links:  
ALPHAFOLD:
 P0CF09
ECOCYC:
 MONOMER0-4227
ECOLIWIKI:
 b0275
INTERPRO:
 IPR024431
INTERPRO:
 IPR003220
PFAM:
 PF03811
PFAM:
 PF12759
PRIDE:
 P0CF09
REFSEQ:
 NP_414809
UNIPROT:
 P0CF09


Operon      
Name: insAB3A3B3         
Operon arrangement:
Transcription unit        Promoter
insA3B3AB3


RNA cis-regulatory element    
Attenuation: Translational


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_472 291181 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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