RegulonDB RegulonDB 10.8: Gene Form
   

yahC gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yahB yahD yahC yahEp yahEp yahCp5 yahCp5

Gene      
Name: yahC    Texpresso search in the literature
Synonym(s): ECK0315, G6182, b0317
Genome position(nucleotides): 334525 <-- 335022 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 52.81
External database links:  
ASAP:
 ABE-0001091
ECHOBASE:
 EB3357
OU-MICROARRAY:
 b0317
PortEco:
 yahC
STRING:
 511145.b0317
COLOMBOS: yahC


Product      
Name: uncharacterized protein YahC
Synonym(s): YahC
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 17.311
Isoelectric point: 8.478
Motif(s):
 
Type Positions Sequence
9 -> 152 VTVGICAGLWQLVSSHVGLSQGWELLGTIGFVAFCSFYAAGGGKSGFIRSLAVNYSGMVWAFFAALTAGWLASVSGLSAFWASVITTVPFSAVVVWQGRFWLLSFIPGGFLGMTLFFASGMNWTVTLLGFLAGNCVGVISEYGG
65 -> 85 GMVWAFFAALTAGWLASVSGL
86 -> 106 SAFWASVITTVPFSAVVVWQG
108 -> 128 FWLLSFIPGGFLGMTLFFASG
131 -> 151 WTVTLLGFLAGNCVGVISEYG

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
 G6182-MONOMER
ECOLIWIKI:
 b0317
INTERPRO:
 IPR009476
PFAM:
 PF06496
PRIDE:
 P77219
REFSEQ:
 NP_414851
UNIPROT:
 P77219


Operon      
Name: yahC         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yahCp5 335068 reverse Similarity to the consensus
Read more > 		[ICWHO] [1]


Evidence    

 [ICWHO] Inferred computationally without human oversight


Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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