RegulonDB RegulonDB 11.0: Gene Form
   

rutC gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

rutD rutB rutC

Gene      
Name: rutC    Texpresso search in the literature
Synonym(s): ECK1001, G6521, b1010, ycdK
Genome position(nucleotides): 1071773 <-- 1072159
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
54.01
External database links:  
ASAP:
ABE-0003412
ECHOBASE:
EB3617
ECOLIHUB:
rutC
OU-MICROARRAY:
b1010
STRING:
511145.b1010
COLOMBOS: rutC


Product      
Name: 3-aminoacrylate deaminase
Synonym(s): RutC, YcdK, putative aminoacrylate peracid reductase RutC
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 13.763
Isoelectric point: 5.588
Motif(s):
 
Type Positions Sequence Comment
13 -> 125 APLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAH

 

Classification:
Multifun Terms (GenProtEC)  
  1 - metabolism --> 1.8 - metabolism of other compounds --> 1.8.3 - nitrogen metabolism
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0016491 - oxidoreductase activity
GO:0019239 - deaminase activity
GO:0042802 - identical protein binding
biological_process GO:0006208 - pyrimidine nucleobase catabolic process
GO:0019740 - nitrogen utilization
GO:0006212 - uracil catabolic process
GO:1901565 - organonitrogen compound catabolic process
External database links:  
ALPHAFOLD:
P0AFQ5
ECOCYC:
G6521-MONOMER
ECOLIWIKI:
b1010
INTERPRO:
IPR019898
INTERPRO:
IPR035959
INTERPRO:
IPR019897
INTERPRO:
IPR006175
MODBASE:
P0AFQ5
PANTHER:
PTHR11803
PDB:
3V4D
PFAM:
PF01042
PRIDE:
P0AFQ5
PROSITE:
PS01094
REFSEQ:
NP_415530
SMR:
P0AFQ5
UNIPROT:
P0AFQ5


Operon      
Name: rutABCDEFG         
Operon arrangement:
Transcription unit        Promoter
rutABCDEFG


Transcriptional Regulation      
Display Regulation             
Activated by: PhoP, NtrC, ArcA
Repressed by: RutR


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References



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