RegulonDB RegulonDB 10.7: Gene Form
   

ycjY gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ycjY pgrR ymjC ymjD PgrR ycjYp6 ycjYp6 TSS_1753 (cluster) TSS_1753 (cluster) ycjZp7 ycjZp7 TSS_1752 TSS_1752

Gene      
Name: ycjY    Texpresso search in the literature
Synonym(s): ECK1324, G6663, b1327
Genome position(nucleotides): 1390933 <-- 1391853 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
47.99
External database links:  
ASAP:
ABE-0004453
ECHOBASE:
EB3681
OU-MICROARRAY:
b1327
PORTECO:
ycjY
REGULONDB:
b1327
STRING:
511145.b1327
M3D: ycjY
COLOMBOS: ycjY
PortEco: b1327


Product      
Name: putative hydrolase YcjY
Synonym(s): YcjY
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 33.659
Isoelectric point: 4.787
Motif(s):
 
Type Positions Sequence
35 -> 284 QAIVLSHPGGGVKEQTAGTYAKKLAEKGFVTIAYDASYQGESGGEPRQLENPYIRTEDISAVIDYLTTLSYVDNTRIGAMGICAGAGYTANAAIQDRRIKAIGTVSAVNIGSIFRNGWENNVKSIDALPYVEAGSNARTSDISSGEYAIMPLAPMKESDAPNEELRQAWEYYHTPRAQYPTAPGYATLRSLNQIITYDAYHMAEVYLTQPTQIVAGSQAGSKWMSDDLYDRASSQDKRYHIVEGANHMDL

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
molecular_function GO:0005515 - protein binding
biological_process GO:0051301 - cell division
Note(s): Note(s): ...[more].
Reference(s): [1] Paradis-Bleau C., et al., 2014
External database links:  
DIP:
DIP-11616N
ECOCYC:
G6663-MONOMER
ECOLIWIKI:
b1327
INTERPRO:
IPR022742
INTERPRO:
IPR029058
MODBASE:
P76049
PDB:
5XB6
PFAM:
PF12146
PRIDE:
P76049
PROTEINMODELPORTAL:
P76049
REFSEQ:
NP_415843
SMR:
P76049
UNIPROT:
P76049


Operon      
Name: ycjY-ymjDC-mpaA         
Operon arrangement:
Transcription unit        Promoter
ycjY-ymjDC-mpaA
 
 


Transcriptional Regulation      
Display Regulation             
Repressed by: PgrR


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1752 1390681 reverse nd [RS-EPT-CBR] [2]
  promoter ycjZp7 1391872 forward Similarity to the consensus
Read more >
[ICWHO] [3]
  promoter TSS_1753 (cluster) 1391946 forward For this promoter, there
Read more >
[RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Paradis-Bleau C., Kritikos G., Orlova K., Typas A., Bernhardt TG., 2014, A genome-wide screen for bacterial envelope biogenesis mutants identifies a novel factor involved in cell wall precursor metabolism., PLoS Genet 10(1):e1004056

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [3] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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