RegulonDB RegulonDB 10.7: Gene Form
   

ddpD gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ddpB ddpD ddpF ddpC osmC

Gene      
Name: ddpD    Texpresso search in the literature
Synonym(s): ECK1478, G6778, b1484, yddP
Genome position(nucleotides): 1558031 <-- 1559017 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
54.1
External database links:  
ASAP:
ABE-0004949
ECHOBASE:
EB3548
OU-MICROARRAY:
b1484
PORTECO:
ddpD
REGULONDB:
b1484
STRING:
511145.b1484
M3D: ddpD
COLOMBOS: ddpD
PortEco: b1484


Product      
Name: putative D,D-dipeptide ABC transporter ATP-binding subunit DdpD
Synonym(s): DdpD, YddP
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 36.1
Isoelectric point: 7.102
Motif(s):
 
Type Positions Sequence
25 -> 184 LNNVSLQINRGEIVGLVGESGSGKSVTAMLIMRLLPTGSYCVHRGQISLLGEDVLNAREKQLRQWRGARVAMIFQEPMTALNPTRRIGLQMMDVIRHHQPISRREARAKAIDLLEEMQIPDAVEVMSRYPFELSGGMRQRVMIALAFSCEPQLIIADEPT
42 -> 49 GESGSGKS
6 -> 257 LDIQQLHLSFPGFNGDVHALNNVSLQINRGEIVGLVGESGSGKSVTAMLIMRLLPTGSYCVHRGQISLLGEDVLNAREKQLRQWRGARVAMIFQEPMTALNPTRRIGLQMMDVIRHHQPISRREARAKAIDLLEEMQIPDAVEVMSRYPFELSGGMRQRVMIALAFSCEPQLIIADEPTTALDVTVQLQVLRLLKHKARASGTAVLFISHDMAVVSQLCDSVYVMYAGSVIESGVTADVIHHPRHPYTIGLL
177 -> 183 LIIADEP
157 -> 160 LSGG

 

Classification:
Multifun Terms (GenProtEC)  
  4 - transport --> 4.3 - Primary Active Transporters --> 4.3.A - Pyrophosphate Bond (ATP; GTP; P2) Hydrolysis-driven Active Transporters --> 4.3.A.1 - The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases --> 4.3.A.1.a - ABC superfamily ATP binding cytoplasmic component
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0043190 - ATP-binding cassette (ABC) transporter complex
molecular_function GO:0016887 - ATPase activity
GO:0000166 - nucleotide binding
GO:0005524 - ATP binding
biological_process GO:0015031 - protein transport
GO:0015833 - peptide transport
GO:0055085 - transmembrane transport
Note(s): Note(s): ...[more].
External database links:  
DIP:
DIP-11669N
ECOCYC:
YDDP-MONOMER
ECOLIWIKI:
b1484
INTERPRO:
IPR027417
INTERPRO:
IPR013563
INTERPRO:
IPR003593
INTERPRO:
IPR003439
INTERPRO:
IPR017871
MODBASE:
P77268
PFAM:
PF08352
PFAM:
PF00005
PRIDE:
P77268
PROSITE:
PS50893
PROSITE:
PS00211
PROTEINMODELPORTAL:
P77268
REFSEQ:
NP_416001
SMART:
SM00382
SMR:
P77268
UNIPROT:
P77268


Operon      
Name: ddpXABCDF         
Operon arrangement:
Transcription unit        Promoter
ddpXABCDF
ddpXABCDF
ddpXABCDF


Transcriptional Regulation      
Display Regulation             
Activated by: NtrC


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References



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