RegulonDB RegulonDB 10.7: Gene Form
   

ddpB gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ddpA ddpB ddpD ddpC ddpF

Gene      
Name: ddpB    Texpresso search in the literature
Synonym(s): ECK1480, G6780, b1486, yddR
Genome position(nucleotides): 1559907 <-- 1560929 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
54.94
External database links:  
ASAP:
ABE-0004955
ECHOBASE:
EB3550
OU-MICROARRAY:
b1486
PORTECO:
ddpB
REGULONDB:
b1486
STRING:
511145.b1486
M3D: ddpB
COLOMBOS: ddpB
PortEco: b1486


Product      
Name: putative D,D-dipeptide ABC transporter membrane subunit DdpB
Synonym(s): DdpB, YddR
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 37.345
Isoelectric point: 5.55
Motif(s):
 
Type Positions Sequence
280 -> 300 TETVFAWPGMGAWVVTSIQAL
97 -> 327 FPATLELAFGALLLALLIGIPLGILSAVWRNRWLDHLVRIMAITGISTPAFWLGLGVIVLFYGHLQILPGGGRLDDWLDPPTHVTGFYLLDALLEGNGEVFFNALQHLILPALTLAFVHLGIVARQIRSAMLEQLSEDYIRTARASGLPGWYIVLCYALPNALIPSITVLGLALGDLLYGAVLTETVFAWPGMGAWVVTSIQALDFPAVMGFAVVVSFAYVLVNLVVDLLY
115 -> 334 GIPLGILSAVWRNRWLDHLVRIMAITGISTPAFWLGLGVIVLFYGHLQILPGGGRLDDWLDPPTHVTGFYLLDALLEGNGEVFFNALQHLILPALTLAFVHLGIVARQIRSAMLEQLSEDYIRTARASGLPGWYIVLCYALPNALIPSITVLGLALGDLLYGAVLTETVFAWPGMGAWVVTSIQALDFPAVMGFAVVVSFAYVLVNLVVDLLYLWIDPRI
136 -> 156 IMAITGISTPAFWLGLGVIVL
247 -> 269 WYIVLCYALPNALIPSITVLGLA

 

Classification:
Multifun Terms (GenProtEC)  
  6 - cell structure --> 6.1 - membrane
  4 - transport --> 4.3 - Primary Active Transporters --> 4.3.A - Pyrophosphate Bond (ATP; GTP; P2) Hydrolysis-driven Active Transporters --> 4.3.A.1 - The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases --> 4.3.A.1.m - ABC superfamily, membrane component
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0005887 - integral component of plasma membrane
GO:0016021 - integral component of membrane
GO:0043190 - ATP-binding cassette (ABC) transporter complex
molecular_function GO:0071916 - dipeptide transmembrane transporter activity
biological_process GO:0015031 - protein transport
GO:0015833 - peptide transport
GO:0055085 - transmembrane transport
GO:0035442 - dipeptide transmembrane transport
Note(s): Note(s): ...[more].
External database links:  
DIP:
DIP-11671N
ECOCYC:
YDDR-MONOMER
ECOLIWIKI:
b1486
INTERPRO:
IPR000515
INTERPRO:
IPR035906
PFAM:
PF00528
PRIDE:
P77308
PROSITE:
PS50928
PROTEINMODELPORTAL:
P77308
REFSEQ:
NP_416003
UNIPROT:
P77308


Operon      
Name: ddpXABCDF         
Operon arrangement:
Transcription unit        Promoter
ddpXABCDF
ddpXABCDF
ddpXABCDF


Transcriptional Regulation      
Display Regulation             
Activated by: NtrC


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References



RegulonDB