RegulonDB RegulonDB 10.8: Gene Form
   

lsrD gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

lsrA lsrC lsrB lsrD

Gene      
Name: lsrD    Texpresso search in the literature
Synonym(s): ECK1508, G6802, b1515, ydeZ
Genome position(nucleotides): 1604047 --> 1605039 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
53.27
External database links:  
ASAP:
ABE-0005061
ECHOBASE:
EB3569
OU-MICROARRAY:
b1515
PortEco:
lsrD
STRING:
511145.b1515
COLOMBOS: lsrD


Product      
Name: Autoinducer-2 ABC transporter membrane subunit LsrD
Synonym(s): LsrD, YdeZ
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 34.456
Isoelectric point: 8.712
Motif(s):
 
Type Positions Sequence
5 -> 25 YGWELALAALLVIEIVAFGAI
35 -> 305 LLFSTSDFICIGIVALPLTMVIVSGGIDISFGSTIGLCAIALGVLFQSGVPMPLAILLTLLLGALCGLINAGLIIYTKVNPLVITLGTLYLFAGSALLLSGMAGATGYEGIGGFPMAFTDFANLDVLGLPVPLIIFLICLLVFWLWLHKTHAGRNVFLIGQSPRVALYSAIPVNRTLCALYAMTGLASAVAAVLLVSYFGSARSDLGASFLMPAITAVVLGGANIYGGSGSIIGTAIAVLLVGYLQQGLQMAGVPNQVSSALSGALLIVVV
68 -> 88 TIGLCAIALGVLFQSGVPMPL
89 -> 109 AILLTLLLGALCGLINAGLII
116 -> 136 LVITLGTLYLFAGSALLLSGM

 

Classification:
Multifun Terms (GenProtEC)  
  6 - cell structure --> 6.1 - membrane
  4 - transport --> 4.3 - Primary Active Transporters --> 4.3.A - Pyrophosphate Bond (ATP; GTP; P2) Hydrolysis-driven Active Transporters --> 4.3.A.1 - The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases --> 4.3.A.1.m - ABC superfamily, membrane component
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
GO:0043190 - ATP-binding cassette (ABC) transporter complex
molecular_function GO:0022857 - transmembrane transporter activity
biological_process GO:0055085 - transmembrane transport
Note(s): Note(s): ...[more].
Evidence: [ICA] Inferred by computational analysis
External database links:  
ECOCYC:
YDEZ-MONOMER
ECOLIWIKI:
b1515
INTERPRO:
IPR001851
PFAM:
PF02653
PRIDE:
P0AFS1
PRODB:
PRO_000023131
REFSEQ:
NP_416032
UNIPROT:
P0AFS1


Operon      
Name: lsrACDBFG-tam         
Operon arrangement:
Transcription unit        Promoter
lsrACDBFG-tam
tam


Transcriptional Regulation      
Display Regulation             
Activated by: CRP
Repressed by: LsrR


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References



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