RegulonDB RegulonDB 10.7: Gene Form
   

uidC gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ydgA uidB uidC uidA uidCp6 uidCp6 uidCp5 uidCp5

Gene      
Name: uidC    Texpresso search in the literature
Synonym(s): ECK1610, G6866, b1615, gusC
Genome position(nucleotides): 1691586 <-- 1692851 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
47.16
External database links:  
ASAP:
ABE-0005405
ECHOBASE:
EB2534
OU-MICROARRAY:
b1615
PORTECO:
uidC
REGULONDB:
b1615
STRING:
511145.b1615
M3D: uidC
COLOMBOS: uidC
PortEco: b1615


Product      
Name: outer membrane porin family protein UidC
Synonym(s): GusC, UidC
Sequence: Get amino acid sequence Fasta Format
Cellular location: outer membrane
Molecular weight: 46.648
Isoelectric point: 9.355
Motif(s):
 
Type Positions Sequence
38 -> 393 KNELRRADKPSAGAGRDIYAWVQGGLLDFNSGYYSNIIGVEGGAYYVYKLGARADMSTRWYLDGDKSFGFALGAVKIKPSENSLLKLGRFGTDYSYGSLPYRIPLMAGSSQRTLPTVSEGALGYWALTPNIDLWGMWRSRVFLWTDSTTGIRDEGVYNSQTGKYDKHRARSFLAASWHDDTSRYSLGASVQKDVSNQIQSILEKSIPLDPNYTLKGELLGFYAQLEGLSRNTSQPNETALVSGQLTWNAPWGSVFGSGGYLRHAMNGAVVDTDIGYPFSLSLDRNREGMQSWQLGVNYRLTPQFTLTFAPIVTRGYESSKRDVRIEGTGILGGMNYRVSEGPLQGMNFFLAADKGR
24 -> 421 AQLADDEAGLRIRLKNELRRADKPSAGAGRDIYAWVQGGLLDFNSGYYSNIIGVEGGAYYVYKLGARADMSTRWYLDGDKSFGFALGAVKIKPSENSLLKLGRFGTDYSYGSLPYRIPLMAGSSQRTLPTVSEGALGYWALTPNIDLWGMWRSRVFLWTDSTTGIRDEGVYNSQTGKYDKHRARSFLAASWHDDTSRYSLGASVQKDVSNQIQSILEKSIPLDPNYTLKGELLGFYAQLEGLSRNTSQPNETALVSGQLTWNAPWGSVFGSGGYLRHAMNGAVVDTDIGYPFSLSLDRNREGMQSWQLGVNYRLTPQFTLTFAPIVTRGYESSKRDVRIEGTGILGGMNYRVSEGPLQGMNFFLAADKGREKRDGSTLGDRLNYWDVKMSIQYDFMLK
106 -> 109 GFAL
1 -> 23 MRKIVAMAVICLTAASGLTSAYA

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0009279 - cell outer membrane
GO:0016020 - membrane
GO:0016021 - integral component of membrane
GO:0046930 - pore complex
molecular_function GO:0015288 - porin activity
biological_process GO:0006811 - ion transport
GO:0008643 - carbohydrate transport
GO:0055085 - transmembrane transport
Note(s): Note(s): ...[more].
External database links:  
DIP:
DIP-11088N
ECOCYC:
G6866-MONOMER
ECOLIWIKI:
b1615
INTERPRO:
IPR005318
INTERPRO:
IPR023614
MINT:
MINT-1299860
PFAM:
PF03573
PRIDE:
Q47706
PRODB:
PRO_000024173
PROTEINMODELPORTAL:
Q47706
REFSEQ:
NP_416132
UNIPROT:
Q47706


Operon      
Name: uidABC         
Operon arrangement:
Transcription unit        Promoter
uidABC


Transcriptional Regulation      
Display Regulation             
Activated by: CRP
Repressed by: UidR, UxuR


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter uidCp5 1692988 reverse Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter uidCp6 1693006 reverse Similarity to the consensus
Read more >
[ICWHO] [1]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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