RegulonDB

Gene
Name:	rsxG
Synonym(s):	ECK1627, G6875, b1631, ydgP
Genome position(nucleotides):	1710204 --> 1710824 Genome Browser
Strand:	forward
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	53.14
External database links:

ASAP:	ABE-0005459
ECHOBASE:	EB3696
OU-MICROARRAY:	b1631
PortEco:	rsxG
STRING:	511145.b1631
COLOMBOS:	rsxG

Product

Name:

SoxR [2Fe-2S] reducing system protein RsxG

Synonym(s):

RsxG, YdgP

Sequence:

Get amino acid sequence Fasta Format

Cellular location:

outer membrane,inner membrane

Molecular weight:

21.912

Isoelectric point:

7.146

Motif(s):

Type	Positions	Sequence
	9 -> 29	GITLALFAAGSTGLTAAINQM
	99 -> 187	GYSGAIQLLVGADFNGTVLGTRVTEHHETPGLGDKIELRLSDWITHFAGKKISGADDAHWAVKKDGGDFDQFTGATITPRAVVNAVKRA

Classification:

Multifun Terms (GenProtEC)
		3 - regulation --> 3.1 - type of regulation --> 3.1.3 - posttranscriptional
		5 - cell processes --> 5.5 - adaptations --> 5.5.6 - other (mechanical, nutritional, oxidative stress)
		6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)
	cellular_component	GO:0009279 - cell outer membrane GO:0016020 - membrane GO:0005886 - plasma membrane GO:0016021 - integral component of membrane
	molecular_function	GO:0009055 - electron transfer activity GO:0010181 - FMN binding
	biological_process	GO:0022900 - electron transport chain GO:0055114 - oxidation-reduction process

Note(s):

Note(s): ...[more].

Evidence:

[IHBCE] Inferred by a human based on computational evidence

Reference(s):

[1] Biegel E., et al., 2011
[2] Koo MS., et al., 2003

External database links:

DIP:

ECOCYC:

ECOLIWIKI:

INTERPRO:

INTERPRO:

PANTHER:

PFAM:

PRIDE:

REFSEQ:

SMART:

SMR:

UNIPROT:

Operon

Name:

ydgK-rsxABCDGE-nth

Operon arrangement:

Transcription unit	Promoter
ydgK-rsxABCDGE-nth	ydgKp
rsxABCDGE-nth	rsxAp

Elements in the selected gene context region unrelated to any object in RegulonDB

	Type	Name	Post Left	Post Right	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
	promoter	TSS_1910	1711455		forward	nd	[RS-EPT-CBR]	[3]

Evidence
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

Reference(s)
[1] Biegel E., Schmidt S., Gonzalez JM., Muller V., 2011, Biochemistry, evolution and physiological function of the Rnf complex, a novel ion-motive electron transport complex in prokaryotes., Cell Mol Life Sci 68(4):613-34
[2] Koo MS., Lee JH., Rah SY., Yeo WS., Lee JW., Lee KL., Koh YS., Kang SO., Roe JH., 2003, A reducing system of the superoxide sensor SoxR in Escherichia coli., EMBO J 22(11):2614-22
[3] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.