RegulonDB

Gene
Name:	ves
Synonym(s):	ECK1740, G6938, b1742, ydjR
Genome position(nucleotides):	1824362 <-- 1824937 Genome Browser
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	51.91
External database links:

ASAP:	ABE-0005809
ECHOBASE:	EB3750
ECOLIHUB:	ves
OU-MICROARRAY:	b1742
STRING:	511145.b1742
COLOMBOS:	ves

Product

Name:

HutD family protein Ves

Synonym(s):

Ves, YdjR

Sequence:

Get amino acid sequence Fasta Format

Molecular weight:

21.577

Isoelectric point:

8.492

Motif(s):

Type	Positions	Sequence
	5 -> 175	DMRKMSVNLWRNAAGETREICTFPPAKRDFYWRASIASIAANGEFSLFPGMERIVTLLEGGEMLLESADRFNHTLKPFQPFAFAADQVVKAKLTAGQMSMDFNIMTRLDVCKAKVRIAERTFTTFGSRGGVVFVINGAWQLGDKLLTTDQGACWFDGRHTLRLLQPQGKLL

Classification:

Multifun Terms (GenProtEC)
Gene Ontology Terms (GO)
Gene Ontology Terms (GO)	biological_process	GO:0070417 - cellular response to cold

Note(s):

Note(s): ...[more].

Evidence:

[IHBCE] Inferred by a human based on computational evidence

Reference(s):

[1] Ghosal A., et al., 2015
[2] Yamada M., et al., 2002

External database links:

DIP:

ECOCYC:

ECOLIWIKI:

INTERPRO:

INTERPRO:

INTERPRO:

INTERPRO:

PANTHER:

PFAM:

PRIDE:

PRODB:

REFSEQ:

UNIPROT:

Operon

Name:

ves

Operon arrangement:

Transcription unit	Promoter
ves	vesp

Elements in the selected gene context region unrelated to any object in RegulonDB

	Type	Name	Post Left	Post Right	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
	promoter	TSS_2052	1822732		forward	nd	[RS-EPT-CBR]	[3]

Evidence
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

Reference(s)
[1] Ghosal A., Upadhyaya BB., Fritz JV., Heintz-Buschart A., Desai MS., Yusuf D., Huang D., Baumuratov A., Wang K., Galas D., Wilmes P., 2015, The extracellular RNA complement of Escherichia coli., Microbiologyopen
[2] Yamada M., Nagamitsu H., Izu H., Nakamura K., Talukder AA., 2002, Characterization of the ves gene, which is expressed at a low temperature in Escherichia coli., J Mol Microbiol Biotechnol 4(2):163-9
[3] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.