RegulonDB

Gene
Name:	ogrK
Synonym(s):	ECK2079, G7119, b2082
Genome position(nucleotides):	2167302 <-- 2167520 Genome Browser
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	50.68
External database links:

ASAP:	ABE-0006893
ECHOBASE:	EB2324
OU-MICROARRAY:	b2082
PortEco:	ogrK
STRING:	511145.b2082
COLOMBOS:	ogrK

Product

Name:

prophage P2 late control protein OgrK

Synonym(s):

OgrK

Sequence:

Get amino acid sequence Fasta Format

Cellular location:

cytosol

Molecular weight:

8.43

Isoelectric point:

8.653

Motif(s):

Type	Positions	Sequence
	57 -> 57	V
	3 -> 49	HCPLCQHAAHARTSRYITDTTKERYHQCQNVNCSATFITYESVQRYI

Classification:

Multifun Terms (GenProtEC)
Multifun Terms (GenProtEC)		8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)
	cellular_component	GO:0005829 - cytosol
	biological_process	GO:0045893 - positive regulation of transcription, DNA-templated

Note(s):

Note(s): ...[more].

Evidence:

[AIFS] Automated inference of function from sequence
[IFC] Inferred by functional complementation

Reference(s):

[1] Maharjan RP., et al., 2013
[2] Perez-Rueda E., et al., 2004
[3] Slettan A., et al., 1992

External database links:

ECOCYC:

ECOLIWIKI:

INTERPRO:

PFAM:

PRIDE:

PRODB:

REFSEQ:

UNIPROT:

Operon

Name:

ogrK

Operon arrangement:

Transcription unit	Promoter
ogrK

RNA cis-regulatory element

Attenuation:	Translational

Elements in the selected gene context region unrelated to any object in RegulonDB

	Type	Name	Post Left	Post Right	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
	promoter	ogrKp5	2167548		reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 5.656. P-value: 1.738e-5 Read more >	[ICWHO]	[4]

Evidence
[ICWHO] Inferred computationally without human oversight

Reference(s)
[1] Maharjan RP., Gaffe J., Plucain J., Schliep M., Wang L., Feng L., Tenaillon O., Ferenci T., Schneider D., 2013, A case of adaptation through a mutation in a tandem duplication during experimental evolution in Escherichia coli., BMC Genomics 14:441
[2] Perez-Rueda E., Collado-Vides J., Segovia L., 2004, Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea., Comput Biol Chem 28(5-6):341-50
[3] Slettan A., Gebhardt K., Kristiansen E., Birkeland NK., Lindqvist BH., 1992, Escherichia coli K-12 and B contain functional bacteriophage P2 ogr genes., J Bacteriol 174(12):4094-100
[4] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78