RegulonDB RegulonDB 10.8: Gene Form
   

ygcS gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ygcU ygcS ygcQ ygcR

Gene      
Name: ygcS    Texpresso search in the literature
Synonym(s): ECK2766, G7437, b2771
Genome position(nucleotides): 2896533 <-- 2897870 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
53.21
External database links:  
ASAP:
ABE-0009082
ECHOBASE:
EB2927
MIM:
212140
OU-MICROARRAY:
b2771
PortEco:
ygcS
STRING:
511145.b2771
COLOMBOS: ygcS


Product      
Name: putative transporter YgcS
Synonym(s): YgcS
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 48.234
Isoelectric point: 9.677
Motif(s):
 
Type Positions Sequence
29 -> 429 LTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPL
57 -> 77 GMIGGSALLGLFLGSLVLGWI
254 -> 274 VFFVCLVIPWFVIYTWLPTIA
287 -> 307 LMLNALLIVGALLGLVLTHLL
338 -> 358 LLLFVLFSTTISAVSNLVGIL

 

Classification:
Multifun Terms (GenProtEC)  
  4 - transport --> 4.2 - Electrochemical potential driven transporters --> 4.2.A - Porters (Uni-, Sym- and Antiporters)
  6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0022857 - transmembrane transporter activity
biological_process GO:0055085 - transmembrane transport
Note(s): Note(s): ...[more].
Reference(s): [1] Jindal S., et al., 2019
External database links:  
ECOCYC:
B2771-MONOMER
ECOLIWIKI:
b2771
INTERPRO:
IPR005828
INTERPRO:
IPR042471
INTERPRO:
IPR036259
INTERPRO:
IPR005829
INTERPRO:
IPR020846
MODBASE:
Q46909
PFAM:
PF00083
PRIDE:
Q46909
PROSITE:
PS50850
PROSITE:
PS00217
REFSEQ:
NP_417251
SMR:
Q46909
UNIPROT:
Q46909


Operon      
Name: ygcS         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Jindal S., Yang L., Day PJ., Kell DB., 2019, Involvement of multiple influx and efflux transporters in the accumulation of cationic fluorescent dyes by Escherichia coli., BMC Microbiol 19(1):195


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