RegulonDB RegulonDB 11.1: Gene Form
   

yqiB gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

cpdA nudF yqiB TSS_3333 TSS_3333 TSS_3332 TSS_3332 TSS_3331 TSS_3331

Gene      
Name: yqiB    Texpresso search in the literature
Synonym(s): ECK3024, G7580, b3033, yzzH
Genome position(nucleotides): 3176858 <-- 3177280
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 48.23
External database links:  
ASAP:
 ABE-0009959
ECHOBASE:
 EB2102
ECOLIHUB:
 yqiB
OU-MICROARRAY:
 b3033
STRING:
 511145.b3033
COLOMBOS: yqiB


Product      
Name: DUF1249 domain-containing protein YqiB
Synonym(s): YqiB, YzzH
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 16.548
Isoelectric point: 9.063
Motif(s):
 
Type Positions Sequence Comment
21 -> 134 QLRRLLPRNDAPGETVSYQVANAQYRLTIVESTRYTTLVTIEQTAPAISYWSLPSMTVRLYHDAMVAEVCSSQQIFRFKARYDYPNKKLHQRDEKHQINQFLADWLRYCLAHGA

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P0ADU7
ECOCYC:
 G7580-MONOMER
ECOLIWIKI:
 b3033
INTERPRO:
 IPR009659
PANTHER:
 PTHR38774
PFAM:
 PF06853
PRIDE:
 P0ADU7
REFSEQ:
 NP_417505
UNIPROT:
 P0ADU7


Operon      
Name: nudF-yqiB-cpdA-yqiA-parE         
Operon arrangement:
Transcription unit        Promoter
nudF-yqiB-cpdA-yqiA-parE


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_3331 3176921 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3332 3176965 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3333 3177710 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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