RegulonDB RegulonDB 10.9: Gene Form
   

yzcX gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

cyaA yzcX cyaY yifL yifLp yifLp TSS_4467 TSS_4467 cyaYp5 cyaYp5

Gene      
Name: yzcX    Texpresso search in the literature
Synonym(s): ECK3802, G7802, b3808
Genome position(nucleotides): 3993850 --> 3994335 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
49.79
External database links:  
ASAP:
ABE-0012437
ECHOBASE:
EB4370
ECOLIHUB:
yzcX
OU-MICROARRAY:
b3808
STRING:
316407.85676243
COLOMBOS: yzcX


Product      
Name: protein YzcX
Synonym(s): YzcX
Sequence: Get amino acid sequence Fasta Format
Cellular location: outer membrane
Molecular weight: 17.342
Isoelectric point: 7.805
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0009279 - cell outer membrane
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G7802-MONOMER
ECOLIWIKI:
b3808
INTERPRO:
IPR016498
PRIDE:
P11291
REFSEQ:
NP_418252
UNIPROT:
P11291


Operon      
Name: yzcX         
Operon arrangement:
Transcription unit        Promoter
yzcX


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter cyaYp5 3994083 reverse Similarity to the consensus
Read more >
[ICWHO], [RS-EPT-CBR] [1], [2]
  promoter TSS_4467 3994491 forward nd [RS-EPT-CBR] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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