RegulonDB RegulonDB 11.0: Gene Form
   

yjdF gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

fumB melB yjdF

Gene      
Name: yjdF    Texpresso search in the literature
Synonym(s): ECK4114, G7825, b4121
Genome position(nucleotides): 4344929 <-- 4345558
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
54.92
External database links:  
ASAP:
ABE-0013498
ECHOBASE:
EB2356
ECOLIHUB:
yjdF
OU-MICROARRAY:
b4121
STRING:
511145.b4121
COLOMBOS: yjdF


Product      
Name: DUF2238 domain-containing inner membrane protein YjdF
Synonym(s): YjdF
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 23.442
Isoelectric point: 8.887
Motif(s):
 
Type Positions Sequence Comment
8 -> 28 LILNTSALTLTLILIYTGISA UniProt: Helical.
32 -> 52 LTWLMEVTPVIIVVQLLLATA UniProt: Helical.
42 -> 182 IIVVQLLLATARRYPLTPLLYTLIFLHAIILMVGGQYTYAKVPVGFEVQEWLGLSRNPYDKLGHFFQGLVPALVAREILVRGMYVRGRKMVAFLVCCVALAISAMYELIEWWAALAMGQGADDFLGTQGDQWDTQSDMFCA
56 -> 76 PLTPLLYTLIFLHAIILMVGG UniProt: Helical.
132 -> 152 VAFLVCCVALAISAMYELIEW UniProt: Helical.

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
P39270
ECOCYC:
G7825-MONOMER
ECOLIWIKI:
b4121
INTERPRO:
IPR014509
PFAM:
PF09997
PRIDE:
P39270
REFSEQ:
NP_418545
UNIPROT:
P39270


Operon      
Name: yjdF         
Operon arrangement:
Transcription unit        Promoter
yjdF


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References



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