RegulonDB RegulonDB 11.2: Gene Form
   

yjdJ gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ghoS yjdJ yjdI ghoSp ghoSp yjdKp3 yjdKp3 TSS_4928 TSS_4928

Gene      
Name: yjdJ    Texpresso search in the literature
Synonym(s): ECK4120, G7829, b4127
Genome position(nucleotides): 4352085 --> 4352357
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 41.03
External database links:  
ASAP:
 ABE-0013515
ECHOBASE:
 EB2360
ECOLIHUB:
 yjdJ
OU-MICROARRAY:
 b4127
STRING:
 511145.b4127
COLOMBOS: yjdJ


Product      
Name: putative N-acetyltransferase YjdJ
Synonym(s): YjdJ
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 10.468
Isoelectric point: 8.492
Motif(s):
 
Type Positions Sequence Comment
2 -> 90 EIREGHNKFYINDKQGKQIAEIVFVPTGENLAIIEHTDVDESLKGQGIGKQLVAKVVEKMRREKRKIIPLCPFAKHEFDKTREYDDIRS UniProt: N-acetyltransferase.
9 -> 88 KFYINDKQGKQIAEIVFVPTGENLAIIEHTDVDESLKGQGIGKQLVAKVVEKMRREKRKIIPLCPFAKHEFDKTREYDDI

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0008080 - N-acetyltransferase activity
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P39274
DIP:
 DIP-12566N
ECOCYC:
 G7829-MONOMER
ECOLIWIKI:
 b4127
INTERPRO:
 IPR031165
INTERPRO:
 IPR016181
MODBASE:
 P39274
PDB:
 5I0C
PFAM:
 PF14542
PRIDE:
 P39274
PROSITE:
 PS51729
REFSEQ:
 NP_418551
SMR:
 P39274
SWISSMODEL:
 P39274
UNIPROT:
 P39274


Operon      
Name: yjdIJ         
Operon arrangement:
Transcription unit        Promoter
yjdIJ


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_4928 4352176 forward nd [RS-EPT-CBR] [1]
  promoter yjdKp3 4352390 forward nd [COMP-AINF] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [COMP-AINF] Inferred computationally without human oversight


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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