RegulonDB RegulonDB 10.10: Gene Form
   

yjeO gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

mscM yjeM yjeO yjeN TSS_5000 TSS_5000 TSS_4999 TSS_4999

Gene      
Name: yjeO    Texpresso search in the literature
Synonym(s): ECK4154, G7839, b4158
Genome position(nucleotides): 4385704 --> 4386018 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
47.94
External database links:  
ASAP:
ABE-0013619
ECHOBASE:
EB2370
ECOLIHUB:
yjeO
OU-MICROARRAY:
b4158
STRING:
511145.b4158
COLOMBOS: yjeO


Product      
Name: DUF2645 domain-containing inner membrane protein YjeO
Synonym(s): YjeO
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 12.638
Isoelectric point: 6.376
Motif(s):
 
Type Positions Sequence
53 -> 73 RDVGVIMTLPLFFPFLWFALW
78 -> 98 GWFMYATALAIFGYWLWQFFL
6 -> 26 FVLCCIWFIVAFLWITITSAL

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G7839-MONOMER
ECOLIWIKI:
b4158
INTERPRO:
IPR022553
PFAM:
PF10840
PRIDE:
P39284
REFSEQ:
NP_418582
UNIPROT:
P39284


Operon      
Name: yjeNO         
Operon arrangement:
Transcription unit        Promoter
yjeNO


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_4999 4386346 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_5000 4386996 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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