RegulonDB RegulonDB 10.10: Gene Form
   

ytfF gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ytfF qorB ytfE NarP NarL NarP NarL NsrR ytfFp5 ytfFp5 ytfFp6 ytfFp6 ytfEp ytfEp

Gene      
Name: ytfF    Texpresso search in the literature
Synonym(s): ECK4206, G7867, b4210
Genome position(nucleotides): 4432091 <-- 4433056 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
55.59
External database links:  
ASAP:
ABE-0013769
ECHOBASE:
EB2399
ECOLIHUB:
ytfF
OU-MICROARRAY:
b4210
STRING:
511145.b4210
COLOMBOS: ytfF


Product      
Name: inner membrane protein YtfF
Synonym(s): YtfF
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 35.208
Isoelectric point: 9.019
Motif(s):
 
Type Positions Sequence
66 -> 86 TALMLTMMGNLIYYFCLASAI
93 -> 113 VSTMIIGTLPVVIPVFANLLY
195 -> 215 AQALVTLPVSLIGYLVACYWL
231 -> 251 LVFISLMVAIAVLCSWVGALC
262 -> 282 VILGPLIVFETLAGLLYTFLL

 

Classification:
Multifun Terms (GenProtEC)  
  4 - transport --> 4.9.B - Putative uncharacterized transport protein
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
Note(s): Note(s): ...[more].
Reference(s): [1] Hori H., et al., 2011
[2] Jindal S., et al., 2019
External database links:  
ECOCYC:
G7867-MONOMER
ECOLIWIKI:
b4210
INTERPRO:
IPR000620
PFAM:
PF00892
PRIDE:
P39314
REFSEQ:
NP_418631
UNIPROT:
P39314


Operon      
Name: ytfF         
Operon arrangement:
Transcription unit        Promoter
ytfF


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter ytfFp6 4433131 reverse nd [ICWHO] [3]
  promoter ytfFp5 4433148 reverse nd [ICWHO] [3]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Hori H., Yoneyama H., Tobe R., Ando T., Isogai E., Katsumata R., 2011, Inducible L-alanine exporter encoded by the novel gene ygaW (alaE) in Escherichia coli., Appl Environ Microbiol 77(12):4027-34

 [2] Jindal S., Yang L., Day PJ., Kell DB., 2019, Involvement of multiple influx and efflux transporters in the accumulation of cationic fluorescent dyes by Escherichia coli., BMC Microbiol 19(1):195

 [3] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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