RegulonDB RegulonDB 11.1: Gene Form
   

insEF4 gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

dgcT insEF4 insF4 insE4 insFp4 insFp4 insFp5 insFp5

Gene      
Name: insEF4    Texpresso search in the literature
Synonym(s): G0-10531
Genome position(nucleotides): 1094275 <-- 1095437
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 53.91
External database links:  
ECOLIHUB:
 insEF-4
COLOMBOS: insEF4


Product      
Name: IS3 element transposase
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 44.967
Isoelectric point: 11.433
Motif(s):
 
Type Positions Sequence Comment
12 -> 78 RKQHSPEFRSEALKLAERIGVTAAARELSLYESQLYNWRSKQQNQQTSSERELEMSTEIARLKRQLA
152 -> 200 SSRLLPGQNSVTVPHA*RMNCVLRVTPLT*KPWRQACAVRD*GQRPPGS
226 -> 323 ARTRSGQETSRTYVQMKAGCIWQWSLTCGHVPLLAGQCRHA*RRNWPAMPCRWRCGGVRGPGTLSFTRTVEASTVQQIIRRN*SGIICVEV*AQKVAA
330 -> 386 KASFIR*KWNVSMENTLSAGK*CGQRCLIISNVITIGGGGTVGVAASVRNNLKTRTS

 
Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.3 - transposon related
Gene Ontology Terms (GO)  
External database links:  
ECOCYC:
 MONOMER0-4248
PFAM:
 PF01527
PFAM:
 PF13333
PFAM:
 PF00665
PFAM:
 PF13276


Operon      
Name: insEF4E4F4         
Operon arrangement:
Transcription unit        Promoter
insE4F4EF4


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter insFp5 1095155 reverse nd [COMP-AINF] [1]
  promoter insFp4 1095196 reverse nd [COMP-AINF] [1]
  promoter ycdUp9 1095633 forward nd [COMP-AINF] [1]
  promoter ycdUp1 1095693 forward nd [COMP-AINF] [1]
  promoter ycdUp11 1095759 forward nd [COMP-AINF] [1]


Evidence    

 [COMP-AINF] Inferred computationally without human oversight


Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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