RegulonDB RegulonDB 11.1: Gene Form
   

insAB3 gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

insAB3 insB3 insA3 ykgS TSS_472 TSS_472

Gene      
Name: insAB3    Texpresso search in the literature
Synonym(s): G0-10538
Genome position(nucleotides): 290649 <-- 291346
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
54.44
External database links:  
ECOLIHUB:
insAB-3
COLOMBOS: insAB3


Product      
Name: InsAB' transposase
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 26.538
Isoelectric point: 11.491
Motif(s):
 
Type Positions Sequence Comment
1 -> 36 MASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCR
43 -> 86 FTYTASQPGTHQKIIDMAMNGVGCRATARIMGVGLNTIFRHLKN
102 -> 232 SSSARKWTNSGDTSGLNRASAGCFTRMTGSGRRLLRTYSVNALWRRWGVL*ACCHPLTW*YG*RMAGRCMNPA*RESCT*SASDIRSELSGIT*I*GSTWHGWDGSRCRSQNRWSSMTKSSGII*T*NTI

 

Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.3 - transposon related
Gene Ontology Terms (GO)  
External database links:  
ECOCYC:
MONOMER0-4231
PFAM:
PF12759
PFAM:
PF03400
PFAM:
PF03811


Operon      
Name: insAB3A3B3         
Operon arrangement:
Transcription unit        Promoter
insA3B3AB3


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_472 291181 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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