RegulonDB RegulonDB 11.1: Gene Form
   

rydC gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

cybB ydcA rydC ydcAp7 ydcAp7 ydcAp6 ydcAp6 rydCp rydCp

Gene      
Name: rydC    Texpresso search in the literature
Synonym(s): ECK4407, G0-10592, b4597
Genome position(nucleotides): 1491442 <-- 1491506
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 49.23
External database links:  
ECOLIHUB:
 rydC
COLOMBOS: rydC


Product      
Name: small regulatory RNA RydC
Synonym(s): RydC
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
  3 - regulation --> 3.1 - type of regulation --> 3.1.3 - posttranscriptional
Gene Ontology Terms (GO)  
molecular_function GO:0005515 - protein binding
GO:0003729 - mRNA binding
biological_process GO:0035194 - post-transcriptional gene silencing by RNA
GO:0045974 - regulation of translation, ncRNA-mediated
GO:1902201 - negative regulation of bacterial-type flagellum-dependent cell motility
GO:1990451 - cellular stress response to acidic pH
Note(s): Note(s): ...[more].
Evidence: [EXP-IMP] Inferred from mutant phenotype
Reference(s): [1] Antal M., et al., 2005
[2] Bianco CM., et al., 2019
[3] King AM., et al., 2019
External database links:  
ECOCYC:
 RNA0-328
ECOLIWIKI:
 b4597


Operon      
Name: rydC         
Operon arrangement:
Transcription unit        Promoter
rydC


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter ydcAp6 1491647 forward nd [COMP-AINF] [4]
  promoter ydcAp7 1491653 forward nd [COMP-AINF] [4]


Evidence    

 [COMP-AINF] Inferred computationally without human oversight


Reference(s)    

 [1] Antal M., Bordeau V., Douchin V., Felden B., 2005, A small bacterial RNA regulates a putative ABC transporter., J Biol Chem 280(9):7901-8

 [2] Bianco CM., Frohlich KS., Vanderpool CK., 2019, Bacterial Cyclopropane Fatty Acid Synthase mRNA Is Targeted by Activating and Repressing Small RNAs., J Bacteriol 201(19)

 [3] King AM., Vanderpool CK., Degnan PH., 2019, sRNA Target Prediction Organizing Tool (SPOT) Integrates Computational and Experimental Data To Facilitate Functional Characterization of Bacterial Small RNAs., mSphere 4(1)

 [4] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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