RegulonDB RegulonDB 10.10: Gene Form
   

arrS gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

hdeD gadE arrS FliZ CRP GadE GadE PhoP GadE GadX GadW YdeO GadX GadW TSS_4127 TSS_4127 TSS_4126 TSS_4126 gadEp gadEp gadEp1 gadEp1 gadEp4 gadEp4 arrSp arrSp gadEp3 gadEp3 TSS_4124 (cluster) TSS_4124 (cluster)

Gene      
Name: arrS    Texpresso search in the literature
Synonym(s): ECK4516, G0-10694, b4704
Genome position(nucleotides): 3657985 <-- 3658054 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
38.57


Product      
Name: small regulatory RNA ArrS
Synonym(s): 6H57, ArrS
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
molecular_function GO:1990825 - sequence-specific mRNA binding
biological_process GO:2000767 - positive regulation of cytoplasmic translation
GO:0097533 - cellular stress response to acid chemical
Note(s): Note(s): ...[more].
Evidence: [IMP] Inferred from mutant phenotype
Reference(s): [1] Aiso T., et al., 2014
External database links:  
ECOCYC:
RNA0-351


Operon      
Name: arrS         
Operon arrangement:
Transcription unit        Promoter
arrS
arrS


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_4124 (cluster) 3657010 forward nd [RS-EPT-CBR] [2]
  promoter TSS_4126 3658886 forward nd [RS-EPT-CBR] [2]
  promoter TSS_4127 3658889 forward nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Aiso T., Kamiya S., Yonezawa H., Gamou S., 2014, Overexpression of an antisense RNA, ArrS, increases the acid resistance of Escherichia coli., Microbiology 160(Pt 5):954-61

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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